Antonio Fabregat
Overview
Explore the profile of Antonio Fabregat including associated specialties, affiliations and a list of published articles.
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Articles
22
Citations
6895
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Recent Articles
1.
Gillespie M, Jassal B, Stephan R, Milacic M, Rothfels K, Senff-Ribeiro A, et al.
Nucleic Acids Res
. 2021 Nov;
50(D1):D687-D692.
PMID: 34788843
The Reactome Knowledgebase (https://reactome.org), an Elixir core resource, provides manually curated molecular details across a broad range of physiological and pathological biological processes in humans, including both hereditary and acquired...
2.
Griss J, Viteri G, Sidiropoulos K, Nguyen V, Fabregat A, Hermjakob H
Mol Cell Proteomics
. 2020 Sep;
19(12):2115-2125.
PMID: 32907876
Pathway analyses are key methods to analyze 'omics experiments. Nevertheless, integrating data from different 'omics technologies and different species still requires considerable bioinformatics knowledge.Here we present the novel ReactomeGSA resource...
3.
Viteri G, Matthews L, Varusai T, Gillespie M, Milacic M, Cook J, et al.
Database (Oxford)
. 2019 Dec;
2019.
PMID: 31802127
Reactome is a manually curated, open-source, open-data knowledge base of biomolecular pathways. Reactome has always provided clear credit attribution for authors, curators and reviewers through fine-grained annotation of all three...
4.
Jassal B, Matthews L, Viteri G, Gong C, Lorente P, Fabregat A, et al.
Nucleic Acids Res
. 2019 Nov;
48(D1):D498-D503.
PMID: 31691815
The Reactome Knowledgebase (https://reactome.org) provides molecular details of signal transduction, transport, DNA replication, metabolism and other cellular processes as an ordered network of molecular transformations in a single consistent data...
5.
Hernandez Sanchez L, Burger B, Horro C, Fabregat A, Johansson S, Njolstad P, et al.
Gigascience
. 2019 Aug;
8(8).
PMID: 31363752
Background: Mapping biomedical data to functional knowledge is an essential task in bioinformatics and can be achieved by querying identifiers (e.g., gene sets) in pathway knowledge bases. However, the isoform...
6.
Fabregat A, Korninger F, Viteri G, Sidiropoulos K, Marin-Garcia P, Ping P, et al.
PLoS Comput Biol
. 2018 Jan;
14(1):e1005968.
PMID: 29377902
Reactome is a free, open-source, open-data, curated and peer-reviewed knowledgebase of biomolecular pathways. One of its main priorities is to provide easy and efficient access to its high quality curated...
7.
Fabregat A, Sidiropoulos K, Viteri G, Marin-Garcia P, Ping P, Stein L, et al.
Bioinformatics
. 2017 Nov;
34(7):1208-1214.
PMID: 29186351
Motivation: Reactome is a free, open-source, open-data, curated and peer-reviewed knowledgebase of biomolecular pathways. For web-based pathway visualization, Reactome uses a custom pathway diagram viewer that has been evolved over...
8.
Tello-Ruiz M, Naithani S, Stein J, Gupta P, Campbell M, Olson A, et al.
Nucleic Acids Res
. 2017 Nov;
46(D1):D1181-D1189.
PMID: 29165610
Gramene (http://www.gramene.org) is a knowledgebase for comparative functional analysis in major crops and model plant species. The current release, #54, includes over 1.7 million genes from 44 reference genomes, most...
9.
Fabregat A, Jupe S, Matthews L, Sidiropoulos K, Gillespie M, Garapati P, et al.
Nucleic Acids Res
. 2017 Nov;
46(D1):D649-D655.
PMID: 29145629
The Reactome Knowledgebase (https://reactome.org) provides molecular details of signal transduction, transport, DNA replication, metabolism, and other cellular processes as an ordered network of molecular transformations-an extended version of a classic...
10.
Sidiropoulos K, Viteri G, Sevilla C, Jupe S, Webber M, Orlic-Milacic M, et al.
Bioinformatics
. 2017 Oct;
33(21):3461-3467.
PMID: 29077811
Motivation: Reactome is a free, open-source, open-data, curated and peer-reviewed knowledge base of biomolecular pathways. Pathways are arranged in a hierarchical structure that largely corresponds to the GO biological process...