Antonio Fabregat
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Explore the profile of Antonio Fabregat including associated specialties, affiliations and a list of published articles.
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22
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6895
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Recent Articles
11.
Gupta P, Naithani S, Tello-Ruiz M, Chougule K, DEustachio P, Fabregat A, et al.
Curr Plant Biol
. 2017 Jul;
7-8:10-15.
PMID: 28713666
Gramene (http://www.gramene.org) is an online, open source, curated resource for plant comparative genomics and pathway analysis designed to support researchers working in plant genomics, breeding, evolutionary biology, system biology, and...
12.
Fabregat A, Sidiropoulos K, Viteri G, Forner O, Marin-Garcia P, Arnau V, et al.
BMC Bioinformatics
. 2017 Mar;
18(1):142.
PMID: 28249561
Background: Reactome aims to provide bioinformatics tools for visualisation, interpretation and analysis of pathway knowledge to support basic research, genome analysis, modelling, systems biology and education. Pathway analysis methods have...
13.
Koscielny G, An P, Carvalho-Silva D, Cham J, Fumis L, Gasparyan R, et al.
Nucleic Acids Res
. 2016 Dec;
45(D1):D985-D994.
PMID: 27899665
We have designed and developed a data integration and visualization platform that provides evidence about the association of known and potential drug targets with diseases. The platform is designed to...
14.
Naithani S, Preece J, DEustachio P, Gupta P, Amarasinghe V, Dharmawardhana P, et al.
Nucleic Acids Res
. 2016 Nov;
45(D1):D1029-D1039.
PMID: 27799469
Plant Reactome (http://plantreactome.gramene.org/) is a free, open-source, curated plant pathway database portal, provided as part of the Gramene project. The database provides intuitive bioinformatics tools for the visualization, analysis and...
15.
Fabregat A, Sidiropoulos K, Garapati P, Gillespie M, Hausmann K, Haw R, et al.
Nucleic Acids Res
. 2015 Dec;
44(D1):D481-7.
PMID: 26656494
The Reactome Knowledgebase (www.reactome.org) provides molecular details of signal transduction, transport, DNA replication, metabolism and other cellular processes as an ordered network of molecular transformations-an extended version of a classic...
16.
Tello-Ruiz M, Stein J, Wei S, Preece J, Olson A, Naithani S, et al.
Nucleic Acids Res
. 2015 Nov;
44(D1):D1133-40.
PMID: 26553803
Gramene (http://www.gramene.org) is an online resource for comparative functional genomics in crops and model plant species. Its two main frameworks are genomes (collaboration with Ensembl Plants) and pathways (The Plant...
17.
Jupe S, Fabregat A, Hermjakob H
Curr Protoc Bioinformatics
. 2015 Mar;
49:8.20.1-8.20.9.
PMID: 25754994
The Reactome database of curated biological pathways provides a tool for visualizing user-supplied expression data as an overlay on pathway diagrams, thereby affording an effective means to examine expression of...
18.
Porras P, Duesbury M, Fabregat A, Ueffing M, Orchard S, Gloeckner C, et al.
Proteomics
. 2015 Feb;
15(8):1390-404.
PMID: 25648416
Molecular interaction databases are essential resources that enable access to a wealth of information on associations between proteins and other biomolecules. Network graphs generated from these data provide an understanding...
19.
Foster J, Moreno P, Fabregat A, Hermjakob H, Steinbeck C, Apweiler R, et al.
PLoS One
. 2013 May;
8(5):e61951.
PMID: 23667450
Protein sequence databases are the pillar upon which modern proteomics is supported, representing a stable reference space of predicted and validated proteins. One example of such resources is UniProt, enriched...
20.
Vizcaino J, Cote R, Csordas A, Dianes J, Fabregat A, Foster J, et al.
Nucleic Acids Res
. 2012 Dec;
41(Database issue):D1063-9.
PMID: 23203882
The PRoteomics IDEntifications (PRIDE, http://www.ebi.ac.uk/pride) database at the European Bioinformatics Institute is one of the most prominent data repositories of mass spectrometry (MS)-based proteomics data. Here, we summarize recent developments...