Henning Hermjakob
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Explore the profile of Henning Hermjakob including associated specialties, affiliations and a list of published articles.
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271
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25428
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Recent Articles
1.
Smith L, Malik-Sheriff R, Nguyen T, Hermjakob H, Karr J, Shaikh B, et al.
bioRxiv
. 2025 Feb;
PMID: 39896466
The BioModels Repository contains over 1000 manually curated mechanistic models drawn from published literature, most of which are encoded in the Systems Biology Markup Language (SBML). This community-based standard formally...
2.
He F, Aebersold R, Baker M, Bian X, Bo X, Chan D, et al.
Nature
. 2024 Dec;
637(8046):E22.
PMID: 39715925
No abstract available.
3.
He F, Aebersold R, Baker M, Bian X, Bo X, Chan D, et al.
Nature
. 2024 Dec;
636(8042):322-331.
PMID: 39663494
The human body contains trillions of cells, classified into specific cell types, with diverse morphologies and functions. In addition, cells of the same type can assume different states within an...
4.
Balu S, Huget S, Medina Reyes J, Ragueneau E, Panneerselvam K, Fischer S, et al.
Nucleic Acids Res
. 2024 Nov;
53(D1):D644-D650.
PMID: 39558156
The Complex Portal (www.ebi.ac.uk/complexportal) is a manually curated reference database for molecular complexes. It is a unifying web resource linking aggregated data on composition, topology and the function of macromolecular...
5.
Clark T, Caufield H, Parker J, Al Manir S, Amorim E, Eddy J, et al.
bioRxiv
. 2024 Nov;
PMID: 39484409
Biomedical research and clinical practice are in the midst of a transition toward significantly increased use of artificial intelligence (AI) and machine learning (ML) methods. These advances promise to enable...
6.
Fischer S, Claussen E, Kourtis S, Sdelci S, Orchard S, Hermjakob H, et al.
bioRxiv
. 2024 Oct;
PMID: 39464102
Macromolecular protein complexes carry out most functions in the cell including essential functions required for cell survival. Unfortunately, we lack the subunit composition for all human protein complexes. To address...
7.
Sankar B, Gilliland D, Rincon J, Hermjakob H, Yan Y, Adam I, et al.
Bioengineering (Basel)
. 2024 Oct;
11(10).
PMID: 39451360
Foundation Models (FMs) are gaining increasing attention in the biomedical artificial intelligence (AI) ecosystem due to their ability to represent and contextualize multimodal biomedical data. These capabilities make FMs a...
8.
Panneerselvam K, Porras P, Del-Toro N, Perfetto L, Shrivastava A, Ragueneau E, et al.
Curr Protoc
. 2024 Oct;
4(10):e70018.
PMID: 39401100
The International Molecular Exchange Consortium (IMEx) has evolved into a vital partnership of open resources dedicated to curating molecular interaction data from the scientific literature. This consortium, which includes IntAct,...
9.
Silberberg M, Hermjakob H, Malik-Sheriff R, Grecco H
Bioinformatics
. 2024 Jul;
40(8).
PMID: 39078116
Motivation: Chemical reaction networks (CRNs) play a pivotal role in diverse fields such as systems biology, biochemistry, chemical engineering, and epidemiology. High-level definitions of CRNs enables to use various simulation...
10.
Martins Dos Santos V, Anton M, Szomolay B, Ostaszewski M, Arts I, Benfeitas R, et al.
F1000Res
. 2024 Jun;
11.
PMID: 36742342
In this white paper, we describe the founding of a new ELIXIR Community - the Systems Biology Community - and its proposed future contributions to both ELIXIR and the broader...