Robin Haw
Overview
Explore the profile of Robin Haw including associated specialties, affiliations and a list of published articles.
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Articles
37
Citations
9336
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Recent Articles
1.
Orlic-Milacic M, Rothfels K, Matthews L, Wright A, Jassal B, Shamovsky V, et al.
Database (Oxford)
. 2024 May;
2024.
PMID: 38713862
Germline and somatic mutations can give rise to proteins with altered activity, including both gain and loss-of-function. The effects of these variants can be captured in disease-specific reactions and pathways...
2.
Milacic M, Beavers D, Conley P, Gong C, Gillespie M, Griss J, et al.
Nucleic Acids Res
. 2023 Nov;
52(D1):D672-D678.
PMID: 37941124
The Reactome Knowledgebase (https://reactome.org), an Elixir and GCBR core biological data resource, provides manually curated molecular details of a broad range of normal and disease-related biological processes. Processes are annotated...
3.
Orlic-Milacic M, Rothfels K, Matthews L, Wright A, Jassal B, Shamovsky V, et al.
bioRxiv
. 2023 Oct;
PMID: 37904913
Disease variant annotation in the context of biological reactions and pathways can provide a standardized overview of molecular phenotypes of pathogenic mutations that is amenable to computational mining and mathematical...
4.
Beavers D, Brunson T, Sanati N, Matthews L, Haw R, Shorser S, et al.
Curr Protoc
. 2023 Jul;
3(7):e845.
PMID: 37467006
Understudied or dark proteins have the potential to shed light on as-yet undiscovered molecular mechanisms that underlie phenotypes and suggest innovative therapeutic approaches for many diseases. The Reactome-IDG (Illuminating the...
5.
Brunson T, Sanati N, Matthews L, Haw R, Beavers D, Shorser S, et al.
bioRxiv
. 2023 Jun;
PMID: 37333417
Limited knowledge about a substantial portion of protein coding genes, known as "dark" proteins, hinders our understanding of their functions and potential therapeutic applications. To address this, we leveraged Reactome,...
6.
Diesh C, Stevens G, Xie P, De Jesus Martinez T, Hershberg E, Leung A, et al.
Genome Biol
. 2023 Apr;
24(1):74.
PMID: 37069644
We present JBrowse 2, a general-purpose genome annotation browser offering enhanced visualization of complex structural variation and evolutionary relationships. It retains core features of JBrowse while adding new views for...
7.
Rothfels K, Milacic M, Matthews L, Haw R, Sevilla C, Gillespie M, et al.
Curr Protoc
. 2023 Apr;
3(4):e722.
PMID: 37053306
Pathway databases provide descriptions of the roles of proteins, nucleic acids, lipids, carbohydrates, and other molecular entities within their biological cellular contexts. Pathway-centric views of these roles may allow for...
8.
De Jesus Martinez T, Hershberg E, Guo E, Stevens G, Diesh C, Xie P, et al.
Bioinformatics
. 2023 Jan;
39(1).
PMID: 36648320
Motivation: JBrowse Jupyter is a package that aims to close the gap between Python programming and genomic visualization. Web-based genome browsers are routinely used for publishing and inspecting genome annotations....
9.
Ostaszewski M, Niarakis A, Mazein A, Kuperstein I, Phair R, Orta-Resendiz A, et al.
Mol Syst Biol
. 2021 Dec;
17(12):e10851.
PMID: 34939300
No abstract available.
10.
Gillespie M, Jassal B, Stephan R, Milacic M, Rothfels K, Senff-Ribeiro A, et al.
Nucleic Acids Res
. 2021 Nov;
50(D1):D687-D692.
PMID: 34788843
The Reactome Knowledgebase (https://reactome.org), an Elixir core resource, provides manually curated molecular details across a broad range of physiological and pathological biological processes in humans, including both hereditary and acquired...