Current Protocols in Bioinformatics
Overview
Current Protocols in Bioinformatics is a comprehensive and authoritative journal that provides step-by-step protocols for analyzing and interpreting biological data using computational methods. It covers a wide range of topics, including sequence analysis, genomics, proteomics, and data mining, making it an essential resource for researchers and practitioners in the field of bioinformatics.
Details
Details
Abbr.
Curr Protoc Bioinformatics
Start
2002
End
2020
Frequency
Updated every three months
p-ISSN
1934-3396
e-ISSN
1934-340X
Country
United States
Language
English
Metrics
Metrics
h-index / Ranks: 5045
71
SJR / Ranks: 13
18663
Recent Articles
1.
Gabler F, Nam S, Till S, Mirdita M, Steinegger M, Soding J, et al.
Curr Protoc Bioinformatics
. 2020 Dec;
72(1):e108.
PMID: 33315308
The MPI Bioinformatics Toolkit (https://toolkit.tuebingen.mpg.de) provides interactive access to a wide range of the best-performing bioinformatics tools and databases, including the state-of-the-art protein sequence comparison methods HHblits and HHpred. The...
2.
Quaglia F, Hatos A, Piovesan D, Tosatto S
Curr Protoc Bioinformatics
. 2020 Oct;
72(1):e107.
PMID: 33017101
DisProt is the major repository of manually curated data for intrinsically disordered proteins collected from the literature. Although lacking a stable tertiary structure under physiological conditions, intrinsically disordered proteins carry...
3.
Puig R, Holmas S, Mironov V, Kuiper M
Curr Protoc Bioinformatics
. 2020 Sep;
72(1):e106.
PMID: 32986267
The BioGateway App is a plugin for the Cytoscape network editor, allowing users to interactively build biological networks by querying the Biogateway Resource Description Framework (RDF) triple store. BioGateway contains...
4.
Yu S, Ferretti D, Schessner J, Rudolph J, Borner G, Cox J
Curr Protoc Bioinformatics
. 2020 Sep;
71(1):e105.
PMID: 32931150
The Perseus software provides a comprehensive framework for the statistical analysis of large-scale quantitative proteomics data, also in combination with other omics dimensions. Rapid developments in proteomics technology and the...
5.
Sweeney B, Tagmazian A, Ribas C, Finn R, Bateman A, Petrov A
Curr Protoc Bioinformatics
. 2020 Aug;
71(1):e104.
PMID: 32846052
Non-coding RNAs are essential for all life and carry out a wide range of functions. Information about these molecules is distributed across dozens of specialized resources. RNAcentral is a database...
6.
Brunet M, Lekehal A, Roucou X
Curr Protoc Bioinformatics
. 2020 Aug;
71(1):e103.
PMID: 32780568
Ten of thousands of open reading frames (ORFs) are hidden within genomes. These alternative ORFs, or small ORFs, have eluded annotations because they are either small or within unsuspected locations....
7.
Prjibelski A, Antipov D, Meleshko D, Lapidus A, Korobeynikov A
Curr Protoc Bioinformatics
. 2020 Jun;
70(1):e102.
PMID: 32559359
SPAdes-St. Petersburg genome Assembler-was originally developed for de novo assembly of genome sequencing data produced for cultivated microbial isolates and for single-cell genomic DNA sequencing. With time, the functionality of...
8.
Noor Z, Mohamedali A, Ranganathan S
Curr Protoc Bioinformatics
. 2020 Jun;
70(1):e101.
PMID: 32478466
The iSwathX web application processes and normalizes mass spectrometry-based proteomics spectral libraries generated in the data-dependent acquisition (DDA) approach. These libraries are stored in various proteomics repositories such as PeptideAtlas...
9.
Estaki M, Jiang L, Bokulich N, McDonald D, Gonzalez A, Kosciolek T, et al.
Curr Protoc Bioinformatics
. 2020 Apr;
70(1):e100.
PMID: 32343490
QIIME 2 is a completely re-engineered microbiome bioinformatics platform based on the popular QIIME platform, which it has replaced. QIIME 2 facilitates comprehensive and fully reproducible microbiome data science, improving...
10.
Erdos G, Dosztanyi Z
Curr Protoc Bioinformatics
. 2020 Apr;
70(1):e99.
PMID: 32237272
IUPred2A is a combined prediction tool designed to discover intrinsically disordered or conditionally disordered proteins and protein regions. Intrinsically disordered regions exist without a well-defined three-dimensional structure in isolation but...