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COVID-19 Disease Map, Building a Computational Repository of SARS-CoV-2 Virus-host Interaction Mechanisms

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References
1.
Hucka M, Bergmann F, Chaouiya C, Drager A, Hoops S, Keating S . The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core Release 2. J Integr Bioinform. 2019; 16(2). PMC: 6798823. DOI: 10.1515/jib-2019-0021. View

2.
Demir E, Cary M, Paley S, Fukuda K, Lemer C, Vastrik I . The BioPAX community standard for pathway data sharing. Nat Biotechnol. 2010; 28(9):935-42. PMC: 3001121. DOI: 10.1038/nbt.1666. View

3.
Renz A, Widerspick L, Drager A . FBA reveals guanylate kinase as a potential target for antiviral therapies against SARS-CoV-2. Bioinformatics. 2020; 36(Suppl 2):i813-i821. PMC: 7773487. DOI: 10.1093/bioinformatics/btaa813. View

4.
Jassal B, Matthews L, Viteri G, Gong C, Lorente P, Fabregat A . The reactome pathway knowledgebase. Nucleic Acids Res. 2019; 48(D1):D498-D503. PMC: 7145712. DOI: 10.1093/nar/gkz1031. View

5.
Villaveces J, Koti P, Habermann B . Tools for visualization and analysis of molecular networks, pathways, and -omics data. Adv Appl Bioinform Chem. 2015; 8:11-22. PMC: 4461095. DOI: 10.2147/AABC.S63534. View