Jonathan Warrell
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Explore the profile of Jonathan Warrell including associated specialties, affiliations and a list of published articles.
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1532
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Recent Articles
1.
Wang G, Warrell J, Zheng S, Gerstein M
Cell Rep Phys Sci
. 2025 Jan;
5(11).
PMID: 39866853
Graph neural networks (GNNs) have emerged as powerful tools for representation learning. Their efficacy depends on their having an optimal underlying graph. In many cases, the most relevant information comes...
2.
Song T, Cosatto E, Wang G, Kuang R, Gerstein M, Min M, et al.
Bioinformatics
. 2024 Sep;
40(Suppl 2):ii111-ii119.
PMID: 39230702
Motivation: Spatial transcriptomics technologies, which generate a spatial map of gene activity, can deepen the understanding of tissue architecture and its molecular underpinnings in health and disease. However, the high...
3.
Aung T, Warrell J, Martinez-Morilla S, Gavrielatou N, Vathiotis I, Yaghoobi V, et al.
Clin Cancer Res
. 2024 Jun;
30(16):3520-3532.
PMID: 38837895
Purpose: We aim to improve the prediction of response or resistance to immunotherapies in patients with melanoma. This goal is based on the hypothesis that current gene signatures predicting immunotherapy...
4.
Emani P, Liu J, Clarke D, Jensen M, Warrell J, Gupta C, et al.
Science
. 2024 May;
384(6698):eadi5199.
PMID: 38781369
Single-cell genomics is a powerful tool for studying heterogeneous tissues such as the brain. Yet little is understood about how genetic variants influence cell-level gene expression. Addressing this, we uniformly...
5.
Emani P, Liu J, Clarke D, Jensen M, Warrell J, Gupta C, et al.
bioRxiv
. 2024 Apr;
PMID: 38562822
Single-cell genomics is a powerful tool for studying heterogeneous tissues such as the brain. Yet, little is understood about how genetic variants influence cell-level gene expression. Addressing this, we uniformly...
6.
Warrell J, Salichos L, Gancz M, Gerstein M
J R Soc Interface
. 2024 Mar;
21(212):20230647.
PMID: 38503341
Cultural processes of change bear many resemblances to biological evolution. The underlying units of non-biological evolution have, however, remained elusive, especially in the domain of music. Here, we introduce a...
7.
Salichos L, Warrell J, Cevasco H, Chung A, Gerstein M
Sci Rep
. 2023 May;
13(1):8470.
PMID: 37231011
For the COVID-19 pandemic, viral transmission has been documented in many historical and geographical contexts. Nevertheless, few studies have explicitly modeled the spatiotemporal flow based on genetic sequences, to develop...
8.
Lau B, Emani P, Chapman J, Yao L, Lam T, Merrill P, et al.
Bioinformatics
. 2022 Dec;
39(1).
PMID: 36477833
Motivation: While many quantum computing (QC) methods promise theoretical advantages over classical counterparts, quantum hardware remains limited. Exploiting near-term QC in computer-aided drug design (CADD) thus requires judicious partitioning between...
9.
Aung T, Acs B, Warrell J, Bai Y, Gaule P, Martinez-Morilla S, et al.
Mod Pathol
. 2021 Feb;
34(7):1261-1270.
PMID: 33536573
Ki67, a nuclear proliferation-related protein, is heavily used in anatomic pathology but has not become a companion diagnostic or a standard-of-care biomarker due to analytic variability in both assay protocols...
10.
Emani P, Warrell J, Anticevic A, Bekiranov S, Gandal M, McConnell M, et al.
Nat Methods
. 2021 Jan;
18(7):701-709.
PMID: 33398186
No abstract available.