Istvan Ladunga
Overview
Explore the profile of Istvan Ladunga including associated specialties, affiliations and a list of published articles.
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Articles
22
Citations
1131
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Recent Articles
1.
Ladunga I
Curr Protoc Bioinformatics
. 2018 Sep;
63(1):e54.
PMID: 30168910
The Basic Local Alignment Search Tool (BLAST) is the first resource to computationally characterize a novel amino acid or nucleic acid sequence. BLAST plays important roles in genomics, transcriptomics, and...
2.
Ladunga I
Curr Protoc Bioinformatics
. 2017 Sep;
59:3.4.1-3.4.24.
PMID: 28902395
BLAST, the Basic Local Alignment Search Tool, is used more frequently than any other biosequence database search program. We show how to run searches on the Web, and demonstrate how...
3.
Ladunga I
Curr Protoc Bioinformatics
. 2017 Jun;
58:3.3.1-3.3.25.
PMID: 28654728
The Basic Local Alignment Search Tool (BLAST) is the first tool in the annotation of nucleotide or amino acid sequences. BLAST is a flagship of bioinformatics due to its performance...
4.
Salas E, Shu J, Cserhati M, Weeks D, Ladunga I
Nucleic Acids Res
. 2016 Jan;
44(10):4595-609.
PMID: 26823500
We present a theory of pluralistic and stochastic gene regulation. To bridge the gap between empirical studies and mathematical models, we integrate pre-existing observations with our meta-analyses of the ENCODE...
5.
Bailey T, Krajewski P, Ladunga I, Lefebvre C, Li Q, Liu T, et al.
PLoS Comput Biol
. 2013 Nov;
9(11):e1003326.
PMID: 24244136
Mapping the chromosomal locations of transcription factors, nucleosomes, histone modifications, chromatin remodeling enzymes, chaperones, and polymerases is one of the key tasks of modern biology, as evidenced by the Encyclopedia...
6.
Brueggeman A, Gangadharaiah D, Cserhati M, Casero D, Weeks D, Ladunga I
Plant Cell
. 2012 May;
24(5):1860-75.
PMID: 22634764
A CO(2)-concentrating mechanism (CCM) is essential for the growth of most eukaryotic algae under ambient (392 ppm) and very low (<100 ppm) CO(2) concentrations. In this study, we used replicated...
7.
Fang W, Si Y, Douglass S, Casero D, Merchant S, Pellegrini M, et al.
Plant Cell
. 2012 May;
24(5):1876-93.
PMID: 22634760
We used RNA sequencing to query the Chlamydomonas reinhardtii transcriptome for regulation by CO(2) and by the transcription regulator CIA5 (CCM1). Both CO(2) and CIA5 are known to play roles...
8.
Blanc G, Agarkova I, Grimwood J, Kuo A, Brueggeman A, Dunigan D, et al.
Genome Biol
. 2012 May;
13(5):R39.
PMID: 22630137
Background: Little is known about the mechanisms of adaptation of life to the extreme environmental conditions encountered in polar regions. Here we present the genome sequence of a unicellular green...
9.
Panda D, Das A, Dinh P, Subramaniam S, Nayak D, Barrows N, et al.
Proc Natl Acad Sci U S A
. 2011 Nov;
108(47):19036-41.
PMID: 22065774
Negative-strand (NS) RNA viruses comprise many pathogens that cause serious diseases in humans and animals. Despite their clinical importance, little is known about the host factors required for their infection....
10.
Ruscher K, Shamloo M, Rickhag M, Ladunga I, Soriano L, Gisselsson L, et al.
Brain
. 2011 Feb;
134(Pt 3):732-46.
PMID: 21278085
Stroke leads to brain damage with subsequent slow and incomplete recovery of lost brain functions. Enriched housing of stroke-injured rats provides multi-modal sensorimotor stimulation, which improves recovery, although the specific...