David Langenberger
Overview
Explore the profile of David Langenberger including associated specialties, affiliations and a list of published articles.
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23
Citations
1519
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Recent Articles
1.
Huther P, Hagmann J, Nunn A, Kakoulidou I, Pisupati R, Langenberger D, et al.
Quant Plant Biol
. 2023 Apr;
3:e19.
PMID: 37077980
Whole-genome bisulfite sequencing (WGBS) is the standard method for profiling DNA methylation at single-nucleotide resolution. Different tools have been developed to extract differentially methylated regions (DMRs), often built upon assumptions...
2.
Nunn A, Otto C, Fasold M, Stadler P, Langenberger D
BMC Genomics
. 2022 Jun;
23(1):477.
PMID: 35764934
Background: Calling germline SNP variants from bisulfite-converted sequencing data poses a challenge for conventional software, which have no inherent capability to dissociate true polymorphisms from artificial mutations induced by the...
3.
Nunn A, Rodriguez-Arevalo I, Tandukar Z, Frels K, Contreras-Garrido A, Carbonell-Bejerano P, et al.
Plant Biotechnol J
. 2022 Jan;
20(5):944-963.
PMID: 34990041
Thlaspi arvense (field pennycress) is being domesticated as a winter annual oilseed crop capable of improving ecosystems and intensifying agricultural productivity without increasing land use. It is a selfing diploid...
4.
Can S, Nunn A, Galanti D, Langenberger D, Becker C, Volmer K, et al.
Epigenomes
. 2021 Dec;
5(2).
PMID: 34968299
Bisulfite sequencing is a widely used technique for determining DNA methylation and its relationship with epigenetics, genetics, and environmental parameters. Various techniques were implemented for epigenome-wide association studies (EWAS) to...
5.
Nunn A, Can S, Otto C, Fasold M, Diez Rodriguez B, Fernandez-Pozo N, et al.
NAR Genom Bioinform
. 2021 Nov;
3(4):lqab106.
PMID: 34805989
The expanding scope and scale of next generation sequencing experiments in ecological plant epigenetics brings new challenges for computational analysis. Existing tools built for model data may not address the...
6.
Nunn A, Otto C, Stadler P, Langenberger D
Brief Bioinform
. 2021 Apr;
22(5).
PMID: 33899096
No abstract available.
7.
Nunn A, Otto C, Stadler P, Langenberger D
Brief Bioinform
. 2021 Feb;
22(5).
PMID: 33624017
Whole genome bisulfite sequencing is currently at the forefront of epigenetic analysis, facilitating the nucleotide-level resolution of 5-methylcytosine (5mC) on a genome-wide scale. Specialized software have been developed to accommodate...
8.
Hackenberg M, Langenberger D, Schwarz A, Erhart J, Kotsyfakis M
RNA
. 2017 May;
23(8):1259-1269.
PMID: 28473453
The hard tick is an important disease vector whose salivary secretions mediate blood-feeding success on vertebrate hosts, including humans. Here we describe the expression profiles and downstream analysis of de...
9.
Patra D, Fasold M, Langenberger D, Steger G, Grosse I, Stadler P
Front Plant Sci
. 2015 Jan;
5:708.
PMID: 25566282
High-throughput sequencing techniques have made it possible to assay an organism's entire repertoire of small non-coding RNAs (ncRNAs) in an efficient and cost-effective manner. The moderate size of small RNA-seq...
10.
Hertel J, Langenberger D, Stadler P
Methods Mol Biol
. 2014 Mar;
1097:437-56.
PMID: 24639171
The computational identification of novel microRNA (miRNA) genes is a challenging task in bioinformatics. Massive amounts of data describing unknown functional RNA transcripts have to be analyzed for putative miRNA...