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Susanne Warrenfeltz

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Articles 12
Citations 685
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Recent Articles
1.
Alvarez-Jarreta J, Amos B, Aurrecoechea C, Bah S, Barba M, Barreto A, et al.
Nucleic Acids Res . 2023 Nov; 52(D1):D808-D816. PMID: 37953350
The Eukaryotic Pathogen, Vector and Host Informatics Resource (VEuPathDB, https://veupathdb.org) is a Bioinformatics Resource Center funded by the National Institutes of Health with additional funding from the Wellcome Trust. VEuPathDB...
2.
Shanmugasundram A, Starns D, Bohme U, Amos B, Wilkinson P, Harb O, et al.
PLoS Negl Trop Dis . 2023 Jan; 17(1):e0011058. PMID: 36656904
Parasitic diseases caused by kinetoplastid parasites are a burden to public health throughout tropical and subtropical regions of the world. TriTrypDB (https://tritrypdb.org) is a free online resource for data mining...
3.
DeBarry J, Nural M, Pakala S, Nayak V, Warrenfeltz S, Humphrey J, et al.
Sci Data . 2022 Nov; 9(1):722. PMID: 36433985
Plasmodium cynomolgi causes zoonotic malarial infections in Southeast Asia and this parasite species is important as a model for Plasmodium vivax and Plasmodium ovale. Each of these species produces hypnozoites...
4.
Amos B, Aurrecoechea C, Barba M, Barreto A, Basenko E, Bazant W, et al.
Nucleic Acids Res . 2021 Oct; 50(D1):D898-D911. PMID: 34718728
The Eukaryotic Pathogen, Vector and Host Informatics Resource (VEuPathDB, https://veupathdb.org) represents the 2019 merger of VectorBase with the EuPathDB projects. As a Bioinformatics Resource Center funded by the National Institutes...
5.
Warrenfeltz S, Kissinger J
Methods Mol Biol . 2020 Mar; 2052:C1. PMID: 32124401
Correction to: Chapter 10 in: Susanne Warrenfeltz, Jessica C. Kissinger, and On Behalf of the EuPathDB Team.
6.
Warrenfeltz S, Kissinger J
Methods Mol Biol . 2019 Aug; 2052:139-192. PMID: 31452162
Cryptosporidium has historically been a difficult organism to work with, and molecular genomic data for this important pathogen have typically lagged behind other prominent protist pathogens. CryptoDB ( http://cryptodb.org/ )...
7.
Basenko E, Pulman J, Shanmugasundram A, Harb O, Crouch K, Starns D, et al.
J Fungi (Basel) . 2018 Aug; 4(1). PMID: 30152809
FungiDB (fungidb.org) is a free online resource for data mining and functional genomics analysis for fungal and oomycete species. FungiDB is part of the Eukaryotic Pathogen Genomics Database Resource (EuPathDB,...
8.
Warrenfeltz S, Basenko E, Crouch K, Harb O, Kissinger J, Roos D, et al.
Methods Mol Biol . 2018 May; 1757:69-113. PMID: 29761457
Fighting infections and developing novel drugs and vaccines requires advanced knowledge of pathogen's biology. Readily accessible genomic, functional genomic, and population data aids biological and translational discovery. The Eukaryotic Pathogen...
9.
Aurrecoechea C, Barreto A, Basenko E, Brestelli J, Brunk B, Cade S, et al.
Nucleic Acids Res . 2016 Dec; 45(D1):D581-D591. PMID: 27903906
The Eukaryotic Pathogen Genomics Database Resource (EuPathDB, http://eupathdb.org) is a collection of databases covering 170+ eukaryotic pathogens (protists & fungi), along with relevant free-living and non-pathogenic species, and select pathogen...
10.
Aurrecoechea C, Barreto A, Brestelli J, Brunk B, Cade S, Doherty R, et al.
Nucleic Acids Res . 2012 Nov; 41(Database issue):D684-91. PMID: 23175615
EuPathDB (http://eupathdb.org) resources include 11 databases supporting eukaryotic pathogen genomic and functional genomic data, isolate data and phylogenomics. EuPathDB resources are built using the same infrastructure and provide a sophisticated...