Ralf Stephan
Overview
Explore the profile of Ralf Stephan including associated specialties, affiliations and a list of published articles.
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10
Citations
1073
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Recent Articles
1.
Orlic-Milacic M, Rothfels K, Matthews L, Wright A, Jassal B, Shamovsky V, et al.
Database (Oxford)
. 2024 May;
2024.
PMID: 38713862
Germline and somatic mutations can give rise to proteins with altered activity, including both gain and loss-of-function. The effects of these variants can be captured in disease-specific reactions and pathways...
2.
Tiwari K, Matthews L, May B, Shamovsky V, Orlic-Milacic M, Rothfels K, et al.
bioRxiv
. 2023 Nov;
PMID: 37986970
Appreciating the rapid advancement and ubiquity of generative AI, particularly ChatGPT, a chatbot using large language models like GPT, we endeavour to explore the potential application of ChatGPT in the...
3.
Milacic M, Beavers D, Conley P, Gong C, Gillespie M, Griss J, et al.
Nucleic Acids Res
. 2023 Nov;
52(D1):D672-D678.
PMID: 37941124
The Reactome Knowledgebase (https://reactome.org), an Elixir and GCBR core biological data resource, provides manually curated molecular details of a broad range of normal and disease-related biological processes. Processes are annotated...
4.
Orlic-Milacic M, Rothfels K, Matthews L, Wright A, Jassal B, Shamovsky V, et al.
bioRxiv
. 2023 Oct;
PMID: 37904913
Disease variant annotation in the context of biological reactions and pathways can provide a standardized overview of molecular phenotypes of pathogenic mutations that is amenable to computational mining and mathematical...
5.
Rothfels K, Milacic M, Matthews L, Haw R, Sevilla C, Gillespie M, et al.
Curr Protoc
. 2023 Apr;
3(4):e722.
PMID: 37053306
Pathway databases provide descriptions of the roles of proteins, nucleic acids, lipids, carbohydrates, and other molecular entities within their biological cellular contexts. Pathway-centric views of these roles may allow for...
6.
Rutz A, Sorokina M, Galgonek J, Mietchen D, Willighagen E, Gaudry A, et al.
Elife
. 2022 May;
11.
PMID: 35616633
Contemporary bioinformatic and chemoinformatic capabilities hold promise to reshape knowledge management, analysis and interpretation of data in natural products research. Currently, reliance on a disparate set of non-standardized, insular, and...
7.
Ostaszewski M, Niarakis A, Mazein A, Kuperstein I, Phair R, Orta-Resendiz A, et al.
Mol Syst Biol
. 2021 Dec;
17(12):e10851.
PMID: 34939300
No abstract available.
8.
Gillespie M, Jassal B, Stephan R, Milacic M, Rothfels K, Senff-Ribeiro A, et al.
Nucleic Acids Res
. 2021 Nov;
50(D1):D687-D692.
PMID: 34788843
The Reactome Knowledgebase (https://reactome.org), an Elixir core resource, provides manually curated molecular details across a broad range of physiological and pathological biological processes in humans, including both hereditary and acquired...
9.
Ostaszewski M, Niarakis A, Mazein A, Kuperstein I, Phair R, Orta-Resendiz A, et al.
Mol Syst Biol
. 2021 Oct;
17(10):e10387.
PMID: 34664389
We need to effectively combine the knowledge from surging literature with complex datasets to propose mechanistic models of SARS-CoV-2 infection, improving data interpretation and predicting key targets of intervention. Here,...
10.
Waagmeester A, Stupp G, Burgstaller-Muehlbacher S, Good B, Griffith M, Griffith O, et al.
Elife
. 2020 Mar;
9.
PMID: 32180547
Wikidata is a community-maintained knowledge base that has been assembled from repositories in the fields of genomics, proteomics, genetic variants, pathways, chemical compounds, and diseases, and that adheres to the...