Olgert Denas
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Explore the profile of Olgert Denas including associated specialties, affiliations and a list of published articles.
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8
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1872
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Recent Articles
1.
Cunial F, Denas O, Belazzougui D
Bioinformatics
. 2022 Feb;
38(7):1838-1845.
PMID: 35134833
Motivation: Fast, lightweight methods for comparing the sequence of ever larger assembled genomes from ever growing databases are increasingly needed in the era of accurate long reads and pan-genome initiatives....
2.
Denas O, Sandstrom R, Cheng Y, Beal K, Herrero J, Hardison R, et al.
BMC Genomics
. 2015 Mar;
16:87.
PMID: 25765714
Background: Because species-specific gene expression is driven by species-specific regulation, understanding the relationship between sequence and function of the regulatory regions in different species will help elucidate how differences among...
3.
Pope B, Ryba T, Dileep V, Yue F, Wu W, Denas O, et al.
Nature
. 2014 Nov;
515(7527):402-5.
PMID: 25409831
Eukaryotic chromosomes replicate in a temporal order known as the replication-timing program. In mammals, replication timing is cell-type-specific with at least half the genome switching replication timing during development, primarily...
4.
Yue F, Cheng Y, Breschi A, Vierstra J, Wu W, Ryba T, et al.
Nature
. 2014 Nov;
515(7527):355-64.
PMID: 25409824
The laboratory mouse shares the majority of its protein-coding genes with humans, making it the premier model organism in biomedical research, yet the two mammals differ in significant ways. To...
5.
Stamatoyannopoulos J, Snyder M, Hardison R, Ren B, Gingeras T, Gilbert D, et al.
Genome Biol
. 2012 Aug;
13(8):418.
PMID: 22889292
To complement the human Encyclopedia of DNA Elements (ENCODE) project and to enable a broad range of mouse genomics efforts, the Mouse ENCODE Consortium is applying the same experimental pipelines...
6.
Suen G, Teiling C, Li L, Holt C, Abouheif E, Bornberg-Bauer E, et al.
PLoS Genet
. 2011 Feb;
7(2):e1002007.
PMID: 21347285
Leaf-cutter ants are one of the most important herbivorous insects in the Neotropics, harvesting vast quantities of fresh leaf material. The ants use leaves to cultivate a fungus that serves...
7.
Apostolico A, Denas O, Dress A
J Biotechnol
. 2010 Aug;
149(3):120-6.
PMID: 20682467
This paper introduces an efficient implementation of approaches to alignment-free comparative genome analysis and genome-based phylogeny relying on substring composition. Distances derived from substring statistics have been proposed recently as...
8.
Apostolico A, Denas O
Algorithms Mol Biol
. 2008 Oct;
3:13.
PMID: 18957094
The increasing throughput of sequencing raises growing needs for methods of sequence analysis and comparison on a genomic scale, notably, in connection with phylogenetic tree reconstruction. Such needs are hardly...