Algorithms for Molecular Biology : Amb
Overview
Algorithms for Molecular Biology : Amb is a scientific journal, published by Biomed Central since 2006 in English. The journal's country of origin is United Kingdom.
Details
Details
Abbr.
Algorithms Mol Biol
Publisher
Biomed Central
Start
2006
End
Continuing
e-ISSN
1748-7188
Country
United Kingdom
Language
English
Metrics
Metrics
h-index / Ranks: 8709
40
SJR / Ranks: 6853
654
CiteScore / Ranks: 8019
3.30
JIF / Ranks: 6819
1.0
Recent Articles
1.
Hwang S, Brown N, Ahmed O, Jenike K, Kovaka S, Schatz M, et al.
Algorithms Mol Biol
. 2025 Mar;
20(1):3.
PMID: 40025556
Pangenomes are growing in number and size, thanks to the prevalence of high-quality long-read assemblies. However, current methods for studying sequence composition and conservation within pangenomes have limitations. Methods based...
2.
Jennings-Shaffer C, Rich D, Macaulay M, Karcher M, Ganapathy T, Kiami S, et al.
Algorithms Mol Biol
. 2025 Feb;
20(1):2.
PMID: 40022201
Bayesian phylogenetics typically estimates a posterior distribution, or aspects thereof, using Markov chain Monte Carlo methods. These methods integrate over tree space by applying local rearrangements to move a tree...
3.
Rouze T, Martayan I, Marchet C, Limasset A
Algorithms Mol Biol
. 2025 Feb;
20(1):1.
PMID: 39923117
The exponential increase in publicly available sequencing data and genomic resources necessitates the development of highly efficient methods for data processing and analysis. Locality-sensitive hashing techniques have successfully transformed large...
4.
Cunha L, Sau I, Souza U
Algorithms Mol Biol
. 2024 Dec;
19(1):24.
PMID: 39719618
Genome rearrangements are events where large blocks of DNA exchange places during evolution. The analysis of these events is a promising tool for understanding evolutionary genomics, providing data for phylogenetic...
5.
Allman E, Banos H, Mitchell J, Rhodes J
Algorithms Mol Biol
. 2024 Nov;
19(1):23.
PMID: 39501362
The tree of blobs of a species network shows only the tree-like aspects of relationships of taxa on a network, omitting information on network substructures where hybridization or other types...
6.
Farnia M, Tahiri N
Algorithms Mol Biol
. 2024 Oct;
19(1):22.
PMID: 39369262
The B cell lineage tree encapsulates the successive phases of B cell differentiation and maturation, transitioning from hematopoietic stem cells to mature, antibody-secreting cells within the immune system. Mathematically, this...
7.
Canzar S, Do V, Jelic S, Laue S, Matijevic D, Prusina T
Algorithms Mol Biol
. 2024 Jun;
19(1):21.
PMID: 38863064
Metric multidimensional scaling is one of the classical methods for embedding data into low-dimensional Euclidean space. It creates the low-dimensional embedding by approximately preserving the pairwise distances between the input...
8.
Rahman A, Dufresne Y, Medvedev P
Algorithms Mol Biol
. 2024 May;
19(1):20.
PMID: 38797858
A colored de Bruijn graph (also called a set of k-mer sets), is a set of k-mers with every k-mer assigned a set of colors. Colored de Bruijn graphs are...
9.
Schulz T, Medvedev P
Algorithms Mol Biol
. 2024 May;
19(1):19.
PMID: 38704605
Background: Given a sequencing read, the broad goal of read mapping is to find the location(s) in the reference genome that have a "similar sequence". Traditionally, "similar sequence" was defined...
10.
Liu Y, Edrisi M, Yan Z, Ogilvie H, Nakhleh L
Algorithms Mol Biol
. 2024 Apr;
19(1):18.
PMID: 38685065
Copy number aberrations (CNAs) are ubiquitous in many types of cancer. Inferring CNAs from cancer genomic data could help shed light on the initiation, progression, and potential treatment of cancer....