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Mohsen Zakeri

Explore the profile of Mohsen Zakeri including associated specialties, affiliations and a list of published articles. Areas
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Articles 11
Citations 147
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11.
Almodaresi F, Zakeri M, Patro R
Bioinformatics . 2021 Jun; 37(22):4048-4055. PMID: 34117875
Motivation: Sequence alignment is one of the first steps in many modern genomic analyses, such as variant detection, transcript abundance estimation and metagenomic profiling. Unfortunately, it is often a computationally...
12.
Srivastava A, Malik L, Sarkar H, Zakeri M, Almodaresi F, Soneson C, et al.
Genome Biol . 2020 Sep; 21(1):239. PMID: 32894187
Background: The accuracy of transcript quantification using RNA-seq data depends on many factors, such as the choice of alignment or mapping method and the quantification model being adopted. While the...
13.
Zakeri M, Srivastava A, Almodaresi F, Patro R
Bioinformatics . 2017 Sep; 33(14):i142-i151. PMID: 28881996
Motivation: Many methods for transcript-level abundance estimation reduce the computational burden associated with the iterative algorithms they use by adopting an approximate factorization of the likelihood function they optimize. This...