Mathias Walzer
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Explore the profile of Mathias Walzer including associated specialties, affiliations and a list of published articles.
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29
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7435
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Recent Articles
11.
Walzer M, Vizcaino J
Methods Mol Biol
. 2019 Sep;
2051:345-371.
PMID: 31552637
In any analytical discipline, data analysis reproducibility is closely interlinked with data quality. In this book chapter focused on mass spectrometry-based proteomics approaches, we introduce how both data analysis reproducibility...
12.
Loffler M, Mohr C, Bichmann L, Freudenmann L, Walzer M, Schroeder C, et al.
Genome Med
. 2019 May;
11(1):28.
PMID: 31039795
Background: Although mutated HLA ligands are considered ideal cancer-specific immunotherapy targets, evidence for their presentation is lacking in hepatocellular carcinomas (HCCs). Employing a unique multi-omics approach comprising a neoepitope identification...
13.
Perez-Riverol Y, Csordas A, Bai J, Bernal-Llinares M, Hewapathirana S, Kundu D, et al.
Nucleic Acids Res
. 2018 Nov;
47(D1):D442-D450.
PMID: 30395289
The PRoteomics IDEntifications (PRIDE) database (https://www.ebi.ac.uk/pride/) is the world's largest data repository of mass spectrometry-based proteomics data, and is one of the founding members of the global ProteomeXchange (PX) consortium....
14.
Deutsch E, Perez-Riverol Y, Chalkley R, Wilhelm M, Tate S, Sachsenberg T, et al.
J Proteome Res
. 2018 Oct;
17(12):4051-4060.
PMID: 30270626
The 2017 Dagstuhl Seminar on Computational Proteomics provided an opportunity for a broad discussion on the current state and future directions of the generation and use of peptide tandem mass...
15.
Deutsch E, Orchard S, Binz P, Bittremieux W, Eisenacher M, Hermjakob H, et al.
J Proteome Res
. 2017 Aug;
16(12):4288-4298.
PMID: 28849660
The Proteomics Standards Initiative (PSI) of the Human Proteome Organization (HUPO) has now been developing and promoting open community standards and software tools in the field of proteomics for 15...
16.
Vizcaino J, Walzer M, Jimenez R, Bittremieux W, Bouyssie D, Carapito C, et al.
F1000Res
. 2017 Jul;
6.
PMID: 28713550
Computational approaches have been major drivers behind the progress of proteomics in recent years. The aim of this white paper is to provide a framework for integrating computational proteomics into...
17.
Pfeuffer J, Sachsenberg T, Alka O, Walzer M, Fillbrunn A, Nilse L, et al.
J Biotechnol
. 2017 Jun;
261:142-148.
PMID: 28559010
Background: In recent years, several mass spectrometry-based omics technologies emerged to investigate qualitative and quantitative changes within thousands of biologically active components such as proteins, lipids and metabolites. The research...
18.
Vizcaino J, Mayer G, Perkins S, Barsnes H, Vaudel M, Perez-Riverol Y, et al.
Mol Cell Proteomics
. 2017 May;
16(7):1275-1285.
PMID: 28515314
The first stable version of the Proteomics Standards Initiative mzIdentML open data standard (version 1.1) was published in 2012-capturing the outputs of peptide and protein identification software. In the intervening...
19.
Schubert B, de la Garza L, Mohr C, Walzer M, Kohlbacher O
BMC Bioinformatics
. 2017 May;
18(1):242.
PMID: 28482806
Background: Immunoinformatics has become a crucial part in biomedical research. Yet many immunoinformatics tools have command line interfaces only and can be difficult to install. Web-based immunoinformatics tools, on the...
20.
Bittremieux W, Walzer M, Tenzer S, Zhu W, Salek R, Eisenacher M, et al.
Anal Chem
. 2017 Mar;
89(8):4474-4479.
PMID: 28318237
To have confidence in results acquired during biological mass spectrometry experiments, a systematic approach to quality control is of vital importance. Nonetheless, until now, only scattered initiatives have been undertaken...