Andrew R Jones
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Explore the profile of Andrew R Jones including associated specialties, affiliations and a list of published articles.
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129
Citations
4262
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Recent Articles
1.
Contreras-Moreira B, Sharma E, Saraf S, Naamati G, Gupta P, Elser J, et al.
bioRxiv
. 2025 Mar;
PMID: 40027622
The rice genome underpins fundamental research and breeding, but the Nipponbare (japonica) reference does not fully encompass the genetic diversity of Asian rice. To address this gap, the Rice Population...
2.
Tzvetkov J, Eyers C, Eyers P, Ramsbottom K, Oswald S, Harris J, et al.
J Proteome Res
. 2025 Feb;
24(3):1250-1264.
PMID: 39907647
Protein sulfation can be crucial in regulating protein-protein interactions but remains largely underexplored. Sulfation is nearly isobaric to phosphorylation, making it particularly challenging to investigate using mass spectrometry. The degree...
3.
Prakash A, Collins A, Vilmovsky L, Fexova S, Jones A, Vizcaino J
J Proteome Res
. 2025 Jan;
24(2):685-695.
PMID: 39764611
The PRIDE database is the largest public data repository of mass spectrometry-based proteomics data and currently stores more than 40,000 data sets covering a wide range of organisms, experimental techniques,...
4.
Woods T, Eden T, Eparvier F, Jones A, Woodraska D, Chamberlin P, et al.
J Geophys Res Space Phys
. 2024 Nov;
129(11):e2024JA032925.
PMID: 39582923
The X-Ray Sensor (XRS) has been making full-disk observations of the solar soft X-ray irradiance onboard National Oceanic and Atmospheric Administration's (NOAA) Geostationary Operational Environmental Satellites since 1975. Critical information...
5.
Klein J, Lam H, Mak T, Bittremieux W, Perez-Riverol Y, Gabriels R, et al.
Anal Chem
. 2024 Nov;
96(46):18491-18501.
PMID: 39514576
Mass spectral libraries are collections of reference spectra, usually associated with specific analytes from which the spectra were generated, that are used for further downstream analysis of new spectra. There...
6.
Camacho O, Ramsbottom K, Prakash A, Sun Z, Riverol Y, Bowler-Barnett E, et al.
J Proteome Res
. 2024 Oct;
23(12):5326-5341.
PMID: 39475123
Malaria is a deadly disease caused by Apicomplexan parasites of the genus. Several species of the genus are known to be infectious to humans, of which is the most virulent....
7.
Combe C, Kolbowski L, Fischer L, Koskinen V, Klein J, Leitner A, et al.
Proteomics
. 2024 Jul;
24(17):e2300385.
PMID: 39001627
The mzIdentML data format, originally developed by the Proteomics Standards Initiative in 2011, is the open XML data standard for peptide and protein identification results coming from mass spectrometry. We...
8.
Gonzalez-Galarza F, McCabe A, Melo Dos Santos E, Ghattaoraya G, Jones A, Middleton D
Methods Mol Biol
. 2024 Jun;
2809:19-36.
PMID: 38907888
The allele frequency net database (AFND, http://www.allelefrequencies.net ) is an online web-based repository that contains information on the frequencies of immune-related genes and their corresponding alleles in worldwide human populations....
9.
Ramsbottom K, Prakash A, Perez-Riverol Y, Camacho O, Sun Z, Kundu D, et al.
J Proteome Res
. 2024 May;
23(7):2518-2531.
PMID: 38810119
Phosphorylation is the most studied post-translational modification, and has multiple biological functions. In this study, we have reanalyzed publicly available mass spectrometry proteomics data sets enriched for phosphopeptides from Asian...
10.
Wang S, Collins A, Prakash A, Fexova S, Papatheodorou I, Jones A, et al.
J Proteome Res
. 2024 May;
23(6):1948-1959.
PMID: 38717300
The availability of an increasingly large amount of public proteomics data sets presents an opportunity for performing combined analyses to generate comprehensive organism-wide protein expression maps across different organisms and...