Federica Mantica
Overview
Explore the profile of Federica Mantica including associated specialties, affiliations and a list of published articles.
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11
Citations
141
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Recent Articles
1.
Mantica F, Irimia M
Bioessays
. 2025 Feb;
:e202400202.
PMID: 39995355
Animals comprise hundreds of cell types, each with specialized biological functions. However, many genes expressed in each cell type belong to widely conserved gene families with ancestrally ubiquitous expression. This...
2.
Mantica F, Iniguez L, Marquez Y, Permanyer J, Torres-Mendez A, Cruz J, et al.
Nat Ecol Evol
. 2024 Apr;
8(6):1140-1153.
PMID: 38622362
Regulation of gene expression is arguably the main mechanism underlying the phenotypic diversity of tissues within and between species. Here we assembled an extensive transcriptomic dataset covering 8 tissues across...
3.
Benisty H, Hernandez-Alias X, Weber M, Anglada-Girotto M, Mantica F, Radusky L, et al.
Cell Syst
. 2023 Mar;
14(4):312-323.e3.
PMID: 36889307
Codon usage influences gene expression distinctly depending on the cell context. Yet, the importance of codon bias in the simultaneous turnover of specific groups of protein-coding genes remains to be...
4.
Braso-Vives M, Marletaz F, Echchiki A, Mantica F, Acemel R, Gomez-Skarmeta J, et al.
Genome Biol
. 2022 Nov;
23(1):243.
PMID: 36401278
Background: Amphioxus are non-vertebrate chordates characterized by a slow morphological and molecular evolution. They share the basic chordate body-plan and genome organization with vertebrates but lack their 2R whole-genome duplications...
5.
Mantica F, Irimia M
Annu Rev Genet
. 2022 Sep;
56:315-337.
PMID: 36055647
Animal species present relatively high levels of gene conservation, and yet they display a great variety of cell type and tissue phenotypes. These diverse phenotypes are mainly specified through differential...
6.
Han H, Best A, Braunschweig U, Mikolajewicz N, Li J, Roth J, et al.
Mol Cell
. 2022 Aug;
82(16):2982-2999.e14.
PMID: 35914530
Alternative splicing (AS) is a critical regulatory layer; yet, factors controlling functionally coordinated splicing programs during developmental transitions are poorly understood. Here, we employ a screening strategy to identify factors...
7.
Gohr A, Mantica F, Hermoso-Pulido A, Tapial J, Marquez Y, Irimia M
Methods Mol Biol
. 2022 Jul;
2537:97-128.
PMID: 35895261
Alternative splicing (AS) can vastly expand animal transcriptomes and proteomes. Two main open questions in the field are how AS is regulated across cell/tissue types and disease, and what roles...
8.
Ciampi L, Mantica F, Lopez-Blanch L, Permanyer J, Rodriguez-Marin C, Zang J, et al.
Proc Natl Acad Sci U S A
. 2022 Jul;
119(29):e2117090119.
PMID: 35858306
Retinal photoreceptors have a distinct transcriptomic profile compared to other neuronal subtypes, likely reflecting their unique cellular morphology and function in the detection of light stimuli by way of the...
9.
Doyle T, Jimenez-Guri E, Hawkes W, Massy R, Mantica F, Permanyer J, et al.
Mol Ecol
. 2022 Jul;
31(16):4332-4350.
PMID: 35801824
Insects are capable of extraordinary feats of long-distance movement that have profound impacts on the function of terrestrial ecosystems. The ability to undertake these movements arose multiple times through the...
10.
Marquez Y, Mantica F, Cozzuto L, Burguera D, Hermoso-Pulido A, Ponomarenko J, et al.
Genome Biol
. 2021 Aug;
22(1):239.
PMID: 34416914
Several bioinformatic tools have been developed for genome-wide identification of orthologous and paralogous genes. However, no corresponding tool allows the detection of exon homology relationships. Here, we present ExOrthist, a...