Benjamin J Sanchez
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Explore the profile of Benjamin J Sanchez including associated specialties, affiliations and a list of published articles.
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22
Citations
957
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Recent Articles
11.
Lu H, Li F, Sanchez B, Zhu Z, Li G, Domenzain I, et al.
Nat Commun
. 2020 Oct;
11(1):5443.
PMID: 33093448
An amendment to this paper has been published and can be accessed via a link at the top of the paper.
12.
Zhang J, Petersen S, Radivojevic T, Ramirez A, Perez-Manriquez A, Abeliuk E, et al.
Nat Commun
. 2020 Sep;
11(1):4880.
PMID: 32978375
Through advanced mechanistic modeling and the generation of large high-quality datasets, machine learning is becoming an integral part of understanding and engineering living systems. Here we show that mechanistic and...
13.
Lieven C, Beber M, Olivier B, Bergmann F, Ataman M, Babaei P, et al.
Nat Biotechnol
. 2020 Apr;
38(4):504.
PMID: 32265554
An amendment to this paper has been published and can be accessed via a link at the top of the paper.
14.
Lieven C, Beber M, Olivier B, Bergmann F, Ataman M, Babaei P, et al.
Nat Biotechnol
. 2020 Mar;
38(3):272-276.
PMID: 32123384
No abstract available.
15.
Ferreira R, Skrekas C, Hedin A, Sanchez B, Siewers V, Nielsen J, et al.
ACS Synth Biol
. 2019 Oct;
8(11):2457-2463.
PMID: 31577419
Engineering for industrial-scale production of valuable chemicals involves extensive modulation of its metabolism. Here, we identified novel gene expression fine-tuning set-ups to enhance endogenous metabolic fluxes toward increasing levels of...
16.
Lu H, Li F, Sanchez B, Zhu Z, Li G, Domenzain I, et al.
Nat Commun
. 2019 Aug;
10(1):3586.
PMID: 31395883
Genome-scale metabolic models (GEMs) represent extensive knowledgebases that provide a platform for model simulations and integrative analysis of omics data. This study introduces Yeast8 and an associated ecosystem of models...
17.
Sanchez B, Li F, Kerkhoven E, Nielsen J
BMC Syst Biol
. 2019 Jan;
13(1):4.
PMID: 30634957
Background: A recurrent problem in genome-scale metabolic models (GEMs) is to correctly represent lipids as biomass requirements, due to the numerous of possible combinations of individual lipid species and the...
18.
Wang H, Marcisauskas S, Sanchez B, Domenzain I, Hermansson D, Agren R, et al.
PLoS Comput Biol
. 2018 Oct;
14(10):e1006541.
PMID: 30335785
RAVEN is a commonly used MATLAB toolbox for genome-scale metabolic model (GEM) reconstruction, curation and constraint-based modelling and simulation. Here we present RAVEN Toolbox 2.0 with major enhancements, including: (i)...
19.
Sanchez B, Zhang C, Nilsson A, Lahtvee P, Kerkhoven E, Nielsen J
Mol Syst Biol
. 2017 Aug;
13(8):935.
PMID: 28779005
Genome-scale metabolic models (GEMs) are widely used to calculate metabolic phenotypes. They rely on defining a set of constraints, the most common of which is that the production of metabolites...
20.
Lahtvee P, Sanchez B, Smialowska A, Kasvandik S, Elsemman I, Gatto F, et al.
Cell Syst
. 2017 Apr;
4(5):495-504.e5.
PMID: 28365149
Protein synthesis is the most energy-consuming process in a proliferating cell, and understanding what controls protein abundances represents a key question in biology and biotechnology. We quantified absolute abundances of...