Simonas Marcisauskas
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Explore the profile of Simonas Marcisauskas including associated specialties, affiliations and a list of published articles.
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7
Citations
329
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Recent Articles
1.
Marcisauskas S, Kim Y, Blasche S, Patil K, Ji B, Nielsen J
Microbiol Resour Announc
. 2021 May;
10(21):e0019521.
PMID: 34042484
We present the annotated draft genome sequences of five fungal strains isolated from kefir grains. These isolates included three ascomycetous (Candida californica, Kazachstania exigua, and Kazachstania unispora) and one basidiomycetous...
2.
Lu H, Li F, Sanchez B, Zhu Z, Li G, Domenzain I, et al.
Nat Commun
. 2020 Oct;
11(1):5443.
PMID: 33093448
An amendment to this paper has been published and can be accessed via a link at the top of the paper.
3.
Marcisauskas S, Ji B, Nielsen J
BMC Bioinformatics
. 2019 Nov;
20(1):551.
PMID: 31694544
Background: Kluyveromyces marxianus is a thermotolerant yeast with multiple biotechnological potentials for industrial applications, which can metabolize a broad range of carbon sources, including less conventional sugars like lactose, xylose,...
4.
Lu H, Li F, Sanchez B, Zhu Z, Li G, Domenzain I, et al.
Nat Commun
. 2019 Aug;
10(1):3586.
PMID: 31395883
Genome-scale metabolic models (GEMs) represent extensive knowledgebases that provide a platform for model simulations and integrative analysis of omics data. This study introduces Yeast8 and an associated ecosystem of models...
5.
Das P, Marcisauskas S, Ji B, Nielsen J
BMC Genomics
. 2019 Jun;
20(1):517.
PMID: 31234773
Background: In the biochemical milieu of human colon, bile acids act as signaling mediators between the host and its gut microbiota. Biotransformation of primary to secondary bile acids have been...
6.
Marcisauskas S, Ulfenborg B, Kristjansdottir B, Waldemarson S, Sundfeldt K
J Proteomics
. 2019 Feb;
196:57-68.
PMID: 30710757
Biomarkers for early detection of ovarian tumors are urgently needed. Tumors of the ovary grow within cysts and most are benign. Surgical sampling is the only way to ensure accurate...
7.
Wang H, Marcisauskas S, Sanchez B, Domenzain I, Hermansson D, Agren R, et al.
PLoS Comput Biol
. 2018 Oct;
14(10):e1006541.
PMID: 30335785
RAVEN is a commonly used MATLAB toolbox for genome-scale metabolic model (GEM) reconstruction, curation and constraint-based modelling and simulation. Here we present RAVEN Toolbox 2.0 with major enhancements, including: (i)...