Arif Harmanci
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Explore the profile of Arif Harmanci including associated specialties, affiliations and a list of published articles.
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30
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1742
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Recent Articles
1.
Curry R, McDonald M, He P, Lozzi B, Ko Y, OReilly I, et al.
bioRxiv
. 2025 Mar;
PMID: 40060572
Non-canonical roles for growth factors in the nucleus have been previously described, but their mechanism of action and biological roles remain enigmatic. Platelet-derived growth factor B (PDGFB) can drive formation...
2.
Zhi D, Jiang X, Harmanci A, Harmanci A
Genome Res
. 2025 Jan;
35(2):326-339.
PMID: 39794122
One of the major challenges in genomic data sharing is protecting participants' privacy in collaborative studies and in cases when genomic data are outsourced to perform analysis tasks, for example,...
3.
Harmanci A, Chen L, Kim M, Jiang X
Unknown
. 2024 Dec;
1:109-112.
PMID: 39712862
To uniformly test and benchmark the secure evaluation of transformer-based models, we designed the iDASH24 homomorphic encryption track dataset. The dataset comprises a protein family classification model with a transformer...
4.
Sadanandan J, Thomas S, Mathew I, Huang Z, Blackburn S, Tandon N, et al.
Elife
. 2024 Dec;
12.
PMID: 39670988
The blood-brain barrier (BBB) controls the movement of molecules into and out of the central nervous system (CNS). Since a functional BBB forms by mouse embryonic day E15.5, we reasoned...
5.
Li W, Chen H, Jiang X, Harmanci A
PLoS Comput Biol
. 2024 Jul;
20(7):e1012142.
PMID: 39047024
Increasing genetic and phenotypic data size is critical for understanding the genetic determinants of diseases. Evidently, establishing practical means for collaboration and data sharing among institutions is a fundamental methodological...
6.
Li W, Kim M, Zhang K, Chen H, Jiang X, Harmanci A
Genome Biol
. 2023 Sep;
24(1):204.
PMID: 37697426
Growing regulatory requirements set barriers around genetic data sharing and collaborations. Moreover, existing privacy-aware paradigms are challenging to deploy in collaborative settings. We present COLLAGENE, a tool base for building...
7.
Li W, Chen H, Jiang X, Harmanci A
iScience
. 2023 Aug;
26(8):107227.
PMID: 37529100
Federated association testing is a powerful approach to conduct large-scale association studies where sites share intermediate statistics through a central server. There are, however, several standing challenges. Confounding factors like...
8.
Raleigh D, Chen W, Choudhury A, Youngblood M, Polley M, Lucas C, et al.
Res Sq
. 2023 Mar;
PMID: 36993741
Background: Surgery is the mainstay of treatment for meningioma, the most common primary intracranial tumor, but improvements in meningioma risk stratification are needed and current indications for postoperative radiotherapy are...
9.
Harmanci A, Harmanci A, Klisch T, Patel A
BMC Genomics
. 2022 Dec;
23(1):841.
PMID: 36539717
Background: RNA-sequencing has become a standard tool for analyzing gene activity in bulk samples and at the single-cell level. By increasing sample sizes and cell counts, this technique can uncover...
10.
Wang S, Kim M, Li W, Jiang X, Chen H, Harmanci A
Brief Bioinform
. 2022 Nov;
23(6).
PMID: 36384083
Background: Estimation of genetic relatedness, or kinship, is used occasionally for recreational purposes and in forensic applications. While numerous methods were developed to estimate kinship, they suffer from high computational...