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Integrative Analysis of Multimodal Mass Spectrometry Data in MZmine 3

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References
1.
Katajamaa M, Miettinen J, Oresic M . MZmine: toolbox for processing and visualization of mass spectrometry based molecular profile data. Bioinformatics. 2006; 22(5):634-6. DOI: 10.1093/bioinformatics/btk039. View

2.
Pluskal T, Castillo S, Villar-Briones A, Oresic M . MZmine 2: modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data. BMC Bioinformatics. 2010; 11:395. PMC: 2918584. DOI: 10.1186/1471-2105-11-395. View

3.
Smirnov A, Qiu Y, Jia W, Walker D, Jones D, Du X . ADAP-GC 4.0: Application of Clustering-Assisted Multivariate Curve Resolution to Spectral Deconvolution of Gas Chromatography-Mass Spectrometry Metabolomics Data. Anal Chem. 2019; 91(14):9069-9077. PMC: 6705124. DOI: 10.1021/acs.analchem.9b01424. View

4.
Du X, Smirnov A, Pluskal T, Jia W, Sumner S . Metabolomics Data Preprocessing Using ADAP and MZmine 2. Methods Mol Biol. 2020; 2104:25-48. PMC: 8359540. DOI: 10.1007/978-1-0716-0239-3_3. View

5.
Korf A, Jeck V, Schmid R, Helmer P, Hayen H . Lipid Species Annotation at Double Bond Position Level with Custom Databases by Extension of the MZmine 2 Open-Source Software Package. Anal Chem. 2019; 91(8):5098-5105. DOI: 10.1021/acs.analchem.8b05493. View