MZmine: Toolbox for Processing and Visualization of Mass Spectrometry Based Molecular Profile Data

Overview

Journal Bioinformatics

Publisher Oxford University Press

Specialty Biology

Date 2006 Jan 13

PMID 16403790

Citations 259

Authors

Mikko Katajamaa

Jarkko Miettinen

Matej Oresic

Affiliations

Soon will be listed here.

Abstract

Summary: New additional methods are presented for processing and visualizing mass spectrometry based molecular profile data, implemented as part of the recently introduced MZmine software. They include new features and extensions such as support for mzXML data format, capability to perform batch processing for large number of files, support for parallel processing, new methods for calculating peak areas using post-alignment peak picking algorithm and implementation of Sammon's mapping and curvilinear distance analysis for data visualization and exploratory analysis.

Availability: MZmine is available under GNU Public license from http://mzmine.sourceforge.net/.

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