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Tomas Pluskal

Explore the profile of Tomas Pluskal including associated specialties, affiliations and a list of published articles. Areas
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Articles 51
Citations 3345
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Recent Articles
1.
Damiani T, Smith J, Hebra T, Perkovic M, cicak M, Kadlecova A, et al.
Plant J . 2025 Mar; 121(5):e70086. PMID: 40052447
Plant specialized metabolites play key roles in diverse physiological processes and ecological interactions. Identifying structurally novel metabolites, as well as discovering known compounds in new species, is often crucial for...
2.
Abiead Y, Rutz A, Zuffa S, Amer B, Xing S, Brungs C, et al.
Nat Metab . 2025 Feb; PMID: 40021935
No abstract available.
3.
Bushuiev R, Bushuiev A, de Jonge N, Young A, Kretschmer F, Samusevich R, et al.
ArXiv . 2024 Nov; PMID: 39575121
The discovery and identification of molecules in biological and environmental samples is crucial for advancing biomedical and chemical sciences. Tandem mass spectrometry (MS/MS) is the leading technique for high-throughput elucidation...
4.
Mutabdzija L, Myoli A, de Jonge N, Damiani T, Schmid R, van der Hooft J, et al.
Methods Mol Biol . 2024 Nov; 2788:C1-C2. PMID: 39562475
No abstract available.
5.
Zhao H, Kvitne K, Brungs C, Mohan S, Charron-Lamoureux V, Bittremieux W, et al.
bioRxiv . 2024 Oct; PMID: 39416075
Despite extensive efforts, extracting information on medication exposure from clinical records remains challenging. To complement this approach, we developed the tandem mass spectrometry (MS/MS) based GNPS Drug Library. This resource...
6.
Pakkir Shah A, Walter A, Ottosson F, Russo F, Navarro-Diaz M, Boldt J, et al.
Nat Protoc . 2024 Sep; 20(1):92-162. PMID: 39304763
Feature-based molecular networking (FBMN) is a popular analysis approach for liquid chromatography-tandem mass spectrometry-based non-targeted metabolomics data. While processing liquid chromatography-tandem mass spectrometry data through FBMN is fairly streamlined, downstream...
7.
Gomes P, Mannochio-Russo H, Schmid R, Zuffa S, Damiani T, Quiros-Guerrero L, et al.
bioRxiv . 2024 May; PMID: 38798440
Understanding the distribution of hundreds of thousands of plant metabolites across the plant kingdom presents a challenge. To address this, we curated publicly available LC-MS/MS data from 19,075 plant extracts...
8.
Heuckeroth S, Damiani T, Smirnov A, Mokshyna O, Brungs C, Korf A, et al.
Nat Protoc . 2024 May; 19(9):2597-2641. PMID: 38769143
Untargeted mass spectrometry (MS) experiments produce complex, multidimensional data that are practically impossible to investigate manually. For this reason, computational pipelines are needed to extract relevant information from raw spectral...
9.
Mutabdzija L, Myoli A, de Jonge N, Damiani T, Schmid R, van der Hooft J, et al.
Methods Mol Biol . 2024 Apr; 2788:97-136. PMID: 38656511
Plant specialized metabolites have diversified vastly over the course of plant evolution, and they are considered key players in complex interactions between plants and their environment. The chemical diversity of...
10.
Hebra T, Smrckova H, Elkatmis B, Prevorovsky M, Pluskal T
ACS Synth Biol . 2023 Nov; 13(2):558-567. PMID: 37991801
The fission yeast is a popular model organism in molecular biology and cell physiology. With its ease of genetic manipulation and growth, supported by in-depth functional annotations in the PomBase...