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Senescence-associated Morphological Profiles (SAMPs): an Image-based Phenotypic Profiling Method for Evaluating the Inter and Intra Model Heterogeneity of Senescence

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Specialty Geriatrics
Date 2022 May 17
PMID 35580013
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Abstract

Senescence occurs in response to a number of damaging stimuli to limit oncogenic transformation and cancer development. As no single, universal senescence marker has been discovered, the confident classification of senescence induction requires the parallel assessment of a series of hallmarks. Therefore, there is a growing need for "first-pass" tools of senescence identification to streamline experimental workflows and complement conventional markers. Here, we utilise a high content, multidimensional phenotypic profiling-based approach, to assess the morphological profiles of senescent cells induced via a range of stimuli. In the context of senescence, we refer to these as senescence-associated morphological profiles (SAMPs), as they facilitate distinction between senescent and proliferating cells. The complexity of the profiles generated also allows exploration of the heterogeneity both between models of senescence and within an individual senescence model, providing a level of insight at the single cell level. Furthermore, we also demonstrate that these models are applicable to the assessment of senescence , which remains a key challenge for the field. Therefore, we believe SAMPs has the potential to serve as a useful addition in the repertoire of senescence researchers, either as a first-pass tool or as part of the established senescence hallmarks.

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References
1.
Bray M, Singh S, Han H, Davis C, Borgeson B, Hartland C . Cell Painting, a high-content image-based assay for morphological profiling using multiplexed fluorescent dyes. Nat Protoc. 2016; 11(9):1757-74. PMC: 5223290. DOI: 10.1038/nprot.2016.105. View

2.
Teo Y, Rattanavirotkul N, Olova N, Salzano A, Quintanilla A, Tarrats N . Notch Signaling Mediates Secondary Senescence. Cell Rep. 2019; 27(4):997-1007.e5. PMC: 6486482. DOI: 10.1016/j.celrep.2019.03.104. View

3.
Kaufman J, Dunlap W . Determining the number of factors to retain: a Windows-based FORTRAN-IMSL program for parallel analysis. Behav Res Methods Instrum Comput. 2000; 32(3):389-95. DOI: 10.3758/bf03200806. View

4.
Hoare M, Ito Y, Kang T, Weekes M, Matheson N, Patten D . NOTCH1 mediates a switch between two distinct secretomes during senescence. Nat Cell Biol. 2016; 18(9):979-92. PMC: 5008465. DOI: 10.1038/ncb3397. View

5.
Gonzalez-Gualda E, Baker A, Fruk L, Munoz-Espin D . A guide to assessing cellular senescence in vitro and in vivo. FEBS J. 2020; 288(1):56-80. DOI: 10.1111/febs.15570. View