Environmentally-induced Epigenetic Conversion of a PiRNA Cluster

Overview

Journal Elife

Specialty Biology

Date 2019 Mar 16

PMID 30875295

Citations 19

Authors

Karine Casier

Valerie Delmarre

Nathalie Gueguen

Catherine Hermant

Elise Viode

Chantal Vaury

Stephane Ronsseray

Emilie Brasset

Laure Teysset

Antoine Boivin

Affiliations

Soon will be listed here.

Abstract

Editorial Note: This article has been through an editorial process in which the authors decide how to respond to the issues raised during peer review. The Reviewing Editor's assessment is that all the issues have been addressed (see decision letter).

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piRNA-Guided Transposon Silencing and Response to Stress in Germline.

Ho S, Theurkauf W, Rice N Viruses. 2024; 16(5).

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Experimentally evolving populations may fail to establish an effective piRNA-based host defense against invading -elements.

Selvaraju D, Wierzbicki F, Kofler R Genome Res. 2024; 34(3):410-425.

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Maternally inherited siRNAs initiate piRNA cluster formation.

Luo Y, He P, Kanrar N, Fejes Toth K, Aravin A Mol Cell. 2023; 83(21):3835-3851.e7.

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The impact of paramutations on the invasion dynamics of transposable elements.

Scarpa A, Kofler R Genetics. 2023; 225(4).

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References

Tittel-Elmer M, Bucher E, Broger L, Mathieu O, Paszkowski J, Vaillant I . Stress-induced activation of heterochromatic transcription. PLoS Genet. 2010; 6(10):e1001175. PMC: 2965753. DOI: 10.1371/journal.pgen.1001175. View

Fast I, Hewel C, Wester L, Schumacher J, Gebert D, Zischler H . Temperature-responsive miRNAs in orchestrate adaptation to different ambient temperatures. RNA. 2017; 23(9):1352-1364. PMC: 5558905. DOI: 10.1261/rna.061119.117. View

Ronsseray S, Anxolabehere D, Periquet G . Hybrid dysgenesis in Drosophila melanogaster: influence of temperature on cytotype determination in the P-M system. Mol Gen Genet. 1984; 196(1):17-23. DOI: 10.1007/BF00334086. View

Liu R, Vitte C, Ma J, Mahama A, Dhliwayo T, Lee M . A GeneTrek analysis of the maize genome. Proc Natl Acad Sci U S A. 2007; 104(28):11844-9. PMC: 1913904. DOI: 10.1073/pnas.0704258104. View

Dorer D, Henikoff S . Transgene repeat arrays interact with distant heterochromatin and cause silencing in cis and trans. Genetics. 1998; 147(3):1181-90. PMC: 1208242. DOI: 10.1093/genetics/147.3.1181. View

Crooks G, Hon G, Chandonia J, Brenner S . WebLogo: a sequence logo generator. Genome Res. 2004; 14(6):1188-90. PMC: 419797. DOI: 10.1101/gr.849004. View

Gunawardane L, Saito K, Nishida K, Miyoshi K, Kawamura Y, Nagami T . A slicer-mediated mechanism for repeat-associated siRNA 5' end formation in Drosophila. Science. 2007; 315(5818):1587-90. DOI: 10.1126/science.1140494. View

Wylie A, Jones A, Abrams J . p53 in the game of transposons. Bioessays. 2016; 38(11):1111-1116. PMC: 5142446. DOI: 10.1002/bies.201600115. View

Josse T, Maurel-Zaffran C, de Vanssay A, Teysset L, Todeschini A, Delmarre V . Telomeric trans-silencing in Drosophila melanogaster: tissue specificity, development and functional interactions between non-homologous telomeres. PLoS One. 2008; 3(9):e3249. PMC: 2547894. DOI: 10.1371/journal.pone.0003249. View

10.

Chandler V . Paramutation: from maize to mice. Cell. 2007; 128(4):641-5. DOI: 10.1016/j.cell.2007.02.007. View

11.

Ito H, Gaubert H, Bucher E, Mirouze M, Vaillant I, Paszkowski J . An siRNA pathway prevents transgenerational retrotransposition in plants subjected to stress. Nature. 2011; 472(7341):115-9. DOI: 10.1038/nature09861. View

12.

Dimond J, Roberts S . Germline DNA methylation in reef corals: patterns and potential roles in response to environmental change. Mol Ecol. 2015; 25(8):1895-904. DOI: 10.1111/mec.13414. View

13.

Mohn F, Sienski G, Handler D, Brennecke J . The rhino-deadlock-cutoff complex licenses noncanonical transcription of dual-strand piRNA clusters in Drosophila. Cell. 2014; 157(6):1364-1379. DOI: 10.1016/j.cell.2014.04.031. View

14.

Langmead B, Trapnell C, Pop M, Salzberg S . Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 2009; 10(3):R25. PMC: 2690996. DOI: 10.1186/gb-2009-10-3-r25. View

15.

Ronsseray S, Lehmann M, Anxolabehere D . The maternally inherited regulation of P elements in Drosophila melanogaster can be elicited by two P copies at cytological site 1A on the X chromosome. Genetics. 1991; 129(2):501-12. PMC: 1204639. DOI: 10.1093/genetics/129.2.501. View

16.

Lemaitre B, Ronsseray S, Coen D . Maternal repression of the P element promoter in the germline of Drosophila melanogaster: a model for the P cytotype. Genetics. 1993; 135(1):149-60. PMC: 1205614. DOI: 10.1093/genetics/135.1.149. View

17.

Antoniewski C . Computing siRNA and piRNA overlap signatures. Methods Mol Biol. 2014; 1173:135-46. DOI: 10.1007/978-1-4939-0931-5_12. View

18.

Zanni V, Eymery A, Coiffet M, Zytnicki M, Luyten I, Quesneville H . Distribution, evolution, and diversity of retrotransposons at the flamenco locus reflect the regulatory properties of piRNA clusters. Proc Natl Acad Sci U S A. 2013; 110(49):19842-7. PMC: 3856796. DOI: 10.1073/pnas.1313677110. View

19.

Kofler R, Senti K, Nolte V, Tobler R, Schlotterer C . Molecular dissection of a natural transposable element invasion. Genome Res. 2018; 28(6):824-835. PMC: 5991514. DOI: 10.1101/gr.228627.117. View

20.

Le Thomas A, Rogers A, Webster A, Marinov G, Liao S, Perkins E . Piwi induces piRNA-guided transcriptional silencing and establishment of a repressive chromatin state. Genes Dev. 2013; 27(4):390-9. PMC: 3589556. DOI: 10.1101/gad.209841.112. View