» Articles » PMID: 28671674

Addressing Preferred Specimen Orientation in Single-particle Cryo-EM Through Tilting

Overview
Journal Nat Methods
Date 2017 Jul 4
PMID 28671674
Citations 505
Authors
Affiliations
Soon will be listed here.
Abstract

We present a strategy for tackling preferred specimen orientation in single-particle cryogenic electron microscopy by employing tilts during data collection. We also describe a tool to quantify the resulting directional resolution using 3D Fourier shell correlation volumes. We applied these methods to determine the structures at near-atomic resolution of the influenza hemagglutinin trimer, which adopts a highly preferred specimen orientation, and of ribosomal biogenesis intermediates, which adopt moderately preferred orientations.

Citing Articles

An asymmetric nautilus-like HflK/C assembly controls FtsH proteolysis of membrane proteins.

Ghanbarpour A, Telusma B, Powell B, Zhang J, Bolstad I, Vargas C EMBO J. 2025; .

PMID: 40082723 DOI: 10.1038/s44318-025-00408-1.


Structural basis for intrinsic strand displacement activity of mitochondrial DNA polymerase.

Nayak A, Sokolova V, Sillamaa S, Herbine K, Sedman J, Temiakov D Nat Commun. 2025; 16(1):2417.

PMID: 40069189 PMC: 11897208. DOI: 10.1038/s41467-025-57594-z.


NPF binding to Arp2 is allosterically linked to the release of ArpC5's N-terminal tail and conformational changes in Arp2/3 complex.

Saks A, Barrie K, Rebowski G, Dominguez R Proc Natl Acad Sci U S A. 2025; 122(8):e2421557122.

PMID: 40042350 PMC: 11873952. DOI: 10.1073/pnas.2421557122.


Human polymerase θ helicase positions DNA microhomologies for double-strand break repair.

Zerio C, Bai Y, Sosa-Alvarado B, Guzi T, Lander G Nat Struct Mol Biol. 2025; .

PMID: 40021738 DOI: 10.1038/s41594-025-01514-8.


TFIIH kinase CDK7 drives cell proliferation through a common core transcription factor network.

Jones T, Feng J, Luyties O, Cozzolino K, Sanford L, Rimel J Sci Adv. 2025; 11(9):eadr9660.

PMID: 40020069 PMC: 11870056. DOI: 10.1126/sciadv.adr9660.


References
1.
Penczek P . Three-dimensional spectral signal-to-noise ratio for a class of reconstruction algorithms. J Struct Biol. 2002; 138(1-2):34-46. DOI: 10.1016/s1047-8477(02)00033-3. View

2.
Mindell J, Grigorieff N . Accurate determination of local defocus and specimen tilt in electron microscopy. J Struct Biol. 2003; 142(3):334-47. DOI: 10.1016/s1047-8477(03)00069-8. View

3.
Rosenthal P, Henderson R . Optimal determination of particle orientation, absolute hand, and contrast loss in single-particle electron cryomicroscopy. J Mol Biol. 2003; 333(4):721-45. DOI: 10.1016/j.jmb.2003.07.013. View

4.
Roseman A . FindEM--a fast, efficient program for automatic selection of particles from electron micrographs. J Struct Biol. 2004; 145(1-2):91-9. DOI: 10.1016/j.jsb.2003.11.007. View

5.
Pettersen E, Goddard T, Huang C, Couch G, Greenblatt D, Meng E . UCSF Chimera--a visualization system for exploratory research and analysis. J Comput Chem. 2004; 25(13):1605-12. DOI: 10.1002/jcc.20084. View