Childs J, Gomes T, Vincent A, Golightly A, Lawless C
PLoS Comput Biol. 2025; 21(2):e1012770.
PMID: 39970187
PMC: 11838899.
DOI: 10.1371/journal.pcbi.1012770.
Wu X, McDermott M, MacLean A
PLoS Comput Biol. 2025; 21(1):e1012762.
PMID: 39836686
PMC: 11753677.
DOI: 10.1371/journal.pcbi.1012762.
Petkidis A, Suomalainen M, Andriasyan V, Singh A, Greber U
mSphere. 2024; 9(10):e0045424.
PMID: 39315811
PMC: 11542551.
DOI: 10.1128/msphere.00454-24.
Gallup O, Sechkar K, Towers S, Steel H
ACS Synth Biol. 2024; 13(9):3046-3050.
PMID: 39230510
PMC: 11421211.
DOI: 10.1021/acssynbio.4c00307.
Hebenstreit D, Karmakar P
Biochem Soc Trans. 2024; 52(4):1695-1702.
PMID: 39119657
PMC: 11668302.
DOI: 10.1042/BST20231286.
Towards early diagnosis of Alzheimer's disease: advances in immune-related blood biomarkers and computational approaches.
Krix S, Wilczynski E, Falgas N, Sanchez-Valle R, Yoles E, Nevo U
Front Immunol. 2024; 15():1343900.
PMID: 38720902
PMC: 11078023.
DOI: 10.3389/fimmu.2024.1343900.
Impact of Resistance on Therapeutic Design: A Moran Model of Cancer Growth.
Lacy M, Jenner A
Bull Math Biol. 2024; 86(4):43.
PMID: 38502371
PMC: 10950993.
DOI: 10.1007/s11538-024-01272-6.
Using mixture density networks to emulate a stochastic within-host model of Francisella tularensis infection.
Carruthers J, Finnie T
PLoS Comput Biol. 2023; 19(12):e1011266.
PMID: 38117811
PMC: 10766174.
DOI: 10.1371/journal.pcbi.1011266.
Estimating emergency department crowding with stochastic population models.
Parnass G, Levtzion-Korach O, Peres R, Assaf M
PLoS One. 2023; 18(12):e0295130.
PMID: 38039309
PMC: 10691698.
DOI: 10.1371/journal.pone.0295130.
Learning single-cell perturbation responses using neural optimal transport.
Bunne C, Stark S, Gut G, Del Castillo J, Levesque M, Lehmann K
Nat Methods. 2023; 20(11):1759-1768.
PMID: 37770709
PMC: 10630137.
DOI: 10.1038/s41592-023-01969-x.
Comparison of rule- and ordinary differential equation-based dynamic model of DARPP-32 signalling network.
Wysocka E, Page M, Snowden J, Simpson T
PeerJ. 2022; 10:e14516.
PMID: 36540795
PMC: 9760030.
DOI: 10.7717/peerj.14516.
Efficient inference and identifiability analysis for differential equation models with random parameters.
Browning A, Drovandi C, Turner I, Jenner A, Simpson M
PLoS Comput Biol. 2022; 18(11):e1010734.
PMID: 36441811
PMC: 9731444.
DOI: 10.1371/journal.pcbi.1010734.
Scalable and flexible inference framework for stochastic dynamic single-cell models.
Persson S, Welkenhuysen N, Shashkova S, Wiqvist S, Reith P, Schmidt G
PLoS Comput Biol. 2022; 18(5):e1010082.
PMID: 35588132
PMC: 9159578.
DOI: 10.1371/journal.pcbi.1010082.
Heritable changes in division speed accompany the diversification of single T cell fate.
Plambeck M, Kazeroonian A, Loeffler D, Kretschmer L, Salinno C, Schroeder T
Proc Natl Acad Sci U S A. 2022; 119(9).
PMID: 35217611
PMC: 8892279.
DOI: 10.1073/pnas.2116260119.
Stochastic integrated model-based protocol for volume-controlled ventilation setting.
Lee J, Chiew Y, Wang X, Mat Nor M, Chase J, Desaive T
Biomed Eng Online. 2022; 21(1):13.
PMID: 35148759
PMC: 8832735.
DOI: 10.1186/s12938-022-00981-0.
Digital Phenotyping in Clinical Neurology.
Gupta A
Semin Neurol. 2022; 42(1):48-59.
PMID: 35016250
PMC: 9117425.
DOI: 10.1055/s-0041-1741495.
Can Systems Biology Advance Clinical Precision Oncology?.
Rocca A, Kholodenko B
Cancers (Basel). 2021; 13(24).
PMID: 34944932
PMC: 8699328.
DOI: 10.3390/cancers13246312.
A virtual sequencer reveals the dephasing patterns in error-correction code DNA sequencing.
Zhou W, Kang L, Duan H, Qiao S, Tao L, Chen Z
Natl Sci Rev. 2021; 8(5):nwaa227.
PMID: 34691637
PMC: 8288425.
DOI: 10.1093/nsr/nwaa227.
Towards Models of the Inflammatory Response in Bone Fracture Healing.
Lafuente-Gracia L, Borgiani E, Nasello G, Geris L
Front Bioeng Biotechnol. 2021; 9:703725.
PMID: 34660547
PMC: 8514728.
DOI: 10.3389/fbioe.2021.703725.
A Review of Using Mathematical Modeling to Improve Our Understanding of Bacteriophage, Bacteria, and Eukaryotic Interactions.
Styles K, Brown A, Sagona A
Front Microbiol. 2021; 12:724767.
PMID: 34621252
PMC: 8490754.
DOI: 10.3389/fmicb.2021.724767.