Chromatin Remodeling by the T Cell Receptor (TCR)-beta Gene Enhancer During Early T Cell Development: Implications for the Control of TCR-beta Locus Recombination
Overview
General Medicine
Authors
Affiliations
Gene targeting studies have shown that T cell receptor (TCR)-beta gene expression and recombination are inhibited after deletion of an enhancer (Ebeta) located at the 3' end of the approximately 500-kb TCR-beta locus. Using knockout mouse models, we have measured, at different regions throughout the TCR-beta locus, the effects of Ebeta deletion on molecular parameters believed to reflect epigenetic changes associated with the control of gene activation, including restriction endonuclease access to chromosomal DNA, germline transcription, DNA methylation, and histone H3 acetylation. Our results demonstrate that, in early developing thymocytes, Ebeta contributes to major chromatin remodeling directed to an approximately 25-kb upstream domain comprised of the Dbeta-Jbeta locus regions. Accordingly, treatment of Ebeta-deleted thymocytes with the histone deacetylase inhibitor trichostatin A relieved the block in TCR-beta gene expression and promoted recombination within the Dbeta-Jbeta loci. Unexpectedly, however, epigenetic processes at distal Vbeta genes on the 5' side of the locus and at the 3' proximal Vbeta14 gene appear to be less dependent on Ebeta, suggesting that Ebeta activity is confined to a discrete region of the TCR-beta locus. These findings have implications with respect to the developmental control of TCR-beta gene recombination, and the process of allelic exclusion at this locus.
Locus folding mechanisms determine modes of antigen receptor gene assembly.
Allyn B, Hayer K, Oyeniran C, Nganga V, Lee K, Mishra B J Exp Med. 2024; 221(2).
PMID: 38189780 PMC: 10772921. DOI: 10.1084/jem.20230985.
Levinson M, Khass M, Burrows P, Schroeder H Immunogenetics. 2023; 75(4):341-353.
PMID: 37119386 DOI: 10.1007/s00251-023-01304-w.
Xu Y, Huang F, Guo W, Feng K, Zhu L, Zeng Z Front Genet. 2023; 14:1145647.
PMID: 36936430 PMC: 10014730. DOI: 10.3389/fgene.2023.1145647.
Characterization of transcripts emanating from enhancer Eβ of the murine TCRβ locus.
Uddin F, Srivastava M FEBS Open Bio. 2021; 11(4):1014-1028.
PMID: 33426767 PMC: 8016127. DOI: 10.1002/2211-5463.13079.
Chen S, Luperchio T, Wong X, Doan E, Byrd A, Roy Choudhury K Cell Rep. 2018; 25(7):1729-1740.e6.
PMID: 30428344 PMC: 6287930. DOI: 10.1016/j.celrep.2018.10.052.