» Articles » PMID: 10354455

A Multifrequency Electron Spin Resonance Study of T4 Lysozyme Dynamics

Overview
Journal Biophys J
Publisher Cell Press
Specialty Biophysics
Date 1999 Jun 4
PMID 10354455
Citations 37
Authors
Affiliations
Soon will be listed here.
Abstract

Electron spin resonance (ESR) spectroscopy at 250 GHz and 9 GHz is utilized to study the dynamics and local structural ordering of a nitroxide-labeled enzyme, T4 lysozyme (EC 3.2.1.17), in aqueous solution from 10 degrees C to 35 degrees C. Two separate derivatives, labeled at sites 44 and 69, were analyzed. The 250-GHz ESR spectra are well described by a microscopic ordering with macroscopic disordering (MOMD) model, which includes the influence of the tether connecting the probe to the protein. In the faster "time scale" of the 250-GHz ESR experiment, the overall rotational diffusion rate of the enzyme is too slow to significantly affect the spectrum, whereas for the 9-GHz ESR spectra, the overall rotational diffusion must be accounted for in the analysis. This is accomplished by using a slowly relaxing local structure model (SRLS) for the dynamics, wherein the tether motion and the overall motion are both included. In this way a simultaneous fit is successfully obtained for both the 250-GHz and 9-GHz ESR spectra. Two distinct motional/ordering modes of the probe are found for both lysozyme derivatives, indicating that the tether exists in two distinct conformations on the ESR time scale. The probe diffuses more rapidly about an axis perpendicular to its tether, which may result from fluctuations of the peptide backbone at the point of attachment of the spin probe.

Citing Articles

Exploring protein structural ensembles: Integration of sparse experimental data from electron paramagnetic resonance spectroscopy with molecular modeling methods.

Belyaeva J, Elgeti M Elife. 2024; 13.

PMID: 39283059 PMC: 11405019. DOI: 10.7554/eLife.99770.


Guidelines for the Simulations of Nitroxide X-Band cw EPR Spectra from Site-Directed Spin Labeling Experiments Using S.

Etienne E, Pierro A, Tamburrini K, Bonucci A, Mileo E, Martinho M Molecules. 2023; 28(3).

PMID: 36771013 PMC: 9919594. DOI: 10.3390/molecules28031348.


A metabolically engineered spin-labeling approach for studying glycans on cells.

Jaiswal M, Tran T, Li Q, Yan X, Zhou M, Kundu K Chem Sci. 2021; 11(46):12522-12532.

PMID: 34094453 PMC: 8162880. DOI: 10.1039/d0sc03874a.


Local ordering and dynamics in anisotropic media by magnetic resonance: from liquid crystals to proteins.

Meirovitch E, Freed J Liq Cryst. 2020; 47(13):1926-1954.

PMID: 32435078 PMC: 7239324. DOI: 10.1080/02678292.2019.1622158.


Determining the Secondary Structure of Membrane Proteins and Peptides Via Electron Spin Echo Envelope Modulation (ESEEM) Spectroscopy.

Liu L, Mayo D, Sahu I, Zhou A, Zhang R, McCarrick R Methods Enzymol. 2015; 564:289-313.

PMID: 26477255 PMC: 4814931. DOI: 10.1016/bs.mie.2015.06.037.


References
1.
Gibrat J, Go N . Normal mode analysis of human lysozyme: study of the relative motion of the two domains and characterization of the harmonic motion. Proteins. 1990; 8(3):258-79. DOI: 10.1002/prot.340080308. View

2.
Todd A, Millhauser G . ESR spectra reflect local and global mobility in a short spin-labeled peptide throughout the alpha-helix----coil transition. Biochemistry. 1991; 30(22):5515-23. DOI: 10.1021/bi00236a026. View

3.
Miick S, Todd A, Millhauser G . Position-dependent local motions in spin-labeled analogues of a short alpha-helical peptide determined by electron spin resonance. Biochemistry. 1991; 30(39):9498-503. DOI: 10.1021/bi00103a016. View

4.
Krinichnyi V . Investigation of biological systems by high resolution 2-mm wave band ESR. J Biochem Biophys Methods. 1991; 23(1):1-30. DOI: 10.1016/0165-022x(91)90047-z. View

5.
Doyle D, Morais Cabral J, Pfuetzner R, Kuo A, Gulbis J, Cohen S . The structure of the potassium channel: molecular basis of K+ conduction and selectivity. Science. 1998; 280(5360):69-77. DOI: 10.1126/science.280.5360.69. View