Algorithms for Molecular Biology : Amb
Overview
Algorithms for Molecular Biology : Amb is a scientific journal, published by Biomed Central since 2006 in English. The journal's country of origin is United Kingdom.
Details
Details
Abbr.
Algorithms Mol Biol
Publisher
Biomed Central
Start
2006
End
Continuing
e-ISSN
1748-7188
Country
United Kingdom
Language
English
Metrics
Metrics
h-index / Ranks: 8709
40
SJR / Ranks: 6853
654
CiteScore / Ranks: 8019
3.30
JIF / Ranks: 6819
1.0
Recent Articles
21.
Gorecki P, Rutecka N, Mykowiecka A, Paszek J
Algorithms Mol Biol
. 2024 Feb;
19(1):7.
PMID: 38355611
We present a novel problem, called MetaEC, which aims to infer gene-species assignments in a collection of partially leaf-labeled gene trees labels by minimizing the size of duplication episode clustering...
22.
Epain V, Andonov R
Algorithms Mol Biol
. 2024 Feb;
19(1):5.
PMID: 38321522
Background: Scaffolding is an intermediate stage of fragment assembly. It consists in orienting and ordering the contigs obtained by the assembly of the sequencing reads. In the general case, the...
23.
Lopez Sanchez A, Lafond M
Algorithms Mol Biol
. 2024 Feb;
19(1):6.
PMID: 38321476
Background: Horizontal gene transfer inference approaches are usually based on gene sequences: parametric methods search for patterns that deviate from a particular genomic signature, while phylogenetic methods use sequences to...
24.
Rajput J, Chandra G, Jain C
Algorithms Mol Biol
. 2024 Jan;
19(1):4.
PMID: 38279113
Pangenome reference graphs are useful in genomics because they compactly represent the genetic diversity within a species, a capability that linear references lack. However, efficiently aligning sequences to these graphs...
25.
Fan J, Khan J, Singh N, Pibiri G, Patro R
Algorithms Mol Biol
. 2024 Jan;
19(1):3.
PMID: 38254124
The problem of sequence identification or matching-determining the subset of reference sequences from a given collection that are likely to contain a short, queried nucleotide sequence-is relevant for many important...
26.
Dai J, Rubel T, Han Y, Molloy E
Algorithms Mol Biol
. 2024 Jan;
19(1):2.
PMID: 38191515
The last decade of phylogenetics has seen the development of many methods that leverage constraints plus dynamic programming. The goal of this algorithmic technique is to produce a phylogeny that...
27.
Braga M, Brockmann L, Klerx K, Stoye J
Algorithms Mol Biol
. 2024 Jan;
19(1):1.
PMID: 38178195
Background: Two genomes [Formula: see text] and [Formula: see text] over the same set of gene families form a canonical pair when each of them has exactly one gene from...
28.
Shen C, Liu B, Williams K, Warnow T
Algorithms Mol Biol
. 2023 Dec;
18(1):21.
PMID: 38062452
Background: Adding sequences into an existing (possibly user-provided) alignment has multiple applications, including updating a large alignment with new data, adding sequences into a constraint alignment constructed using biological knowledge,...
29.
Bonnet K, Marschall T, Doerr D
Algorithms Mol Biol
. 2023 Dec;
18(1):20.
PMID: 38057863
No abstract available.
30.
Marchand B, Will S, Berkemer S, Ponty Y, Bulteau L
Algorithms Mol Biol
. 2023 Dec;
18(1):18.
PMID: 38041153
Although RNA secondary structure prediction is a textbook application of dynamic programming (DP) and routine task in RNA structure analysis, it remains challenging whenever pseudoknots come into play. Since the...