Algorithms for Molecular Biology : Amb
Overview
Algorithms for Molecular Biology : Amb is a scientific journal, published by Biomed Central since 2006 in English. The journal's country of origin is United Kingdom.
Details
Details
Abbr.
Algorithms Mol Biol
Publisher
Biomed Central
Start
2006
End
Continuing
e-ISSN
1748-7188
Country
United Kingdom
Language
English
Metrics
Metrics
h-index / Ranks: 8709
40
SJR / Ranks: 6853
654
CiteScore / Ranks: 8019
3.30
JIF / Ranks: 6819
1.0
Recent Articles
11.
Khan J, Rubel T, Molloy E, Dhulipala L, Patro R
Algorithms Mol Biol
. 2024 Apr;
19(1):16.
PMID: 38679714
Purpose: String indexes such as the suffix array (SA) and the closely related longest common prefix (LCP) array are fundamental objects in bioinformatics and have a wide variety of applications....
12.
Qiu Y, Shen Y, Kingsford C
Algorithms Mol Biol
. 2024 Apr;
19(1):17.
PMID: 38679703
The graph traversal edit distance (GTED), introduced by Ebrahimpour Boroojeny et al. (2018), is an elegant distance measure defined as the minimum edit distance between strings reconstructed from Eulerian trails...
13.
Hong A, Oliva M, Koppl D, Bannai H, Boucher C, Gagie T
Algorithms Mol Biol
. 2024 Apr;
19(1):15.
PMID: 38600518
FM-indexes are crucial data structures in DNA alignment, but searching with them usually takes at least one random access per character in the query pattern. Ferragina and Fischer [1] observed...
14.
Diaz-Dominguez D, Leinonen M, Salmela L
Algorithms Mol Biol
. 2024 Apr;
19(1):14.
PMID: 38581000
Computing k-mer frequencies in a collection of reads is a common procedure in many genomic applications. Several state-of-the-art k-mer counters rely on hash tables to carry out this task but...
15.
Yao H, Marchand B, Berkemer S, Ponty Y, Will S
Algorithms Mol Biol
. 2024 Mar;
19(1):13.
PMID: 38493130
Motivation: Many bioinformatics problems can be approached as optimization or controlled sampling tasks, and solved exactly and efficiently using Dynamic Programming (DP). However, such exact methods are typically tailored towards...
16.
Arasti S, Mirarab S
Algorithms Mol Biol
. 2024 Mar;
19(1):12.
PMID: 38481327
Gene trees can be different from the species tree due to biological processes and inference errors. One way to obtain a species tree is to find one that maximizes some...
17.
Liptak Z, Masillo F, Puglisi S
Algorithms Mol Biol
. 2024 Mar;
19(1):11.
PMID: 38475889
We introduce a new algorithm for constructing the generalized suffix array of a collection of highly similar strings. As a first step, we construct a compressed representation of the matching...
18.
Rizzo N, Caceres M, Makinen V
Algorithms Mol Biol
. 2024 Mar;
19(1):10.
PMID: 38468275
Background: We study the problem of finding maximal exact matches (MEMs) between a query string Q and a labeled graph G. MEMs are an important class of seeds, often used...
19.
Gray M, Will S, Jabbari H
Algorithms Mol Biol
. 2024 Mar;
19(1):9.
PMID: 38433200
Motivation: Computational RNA secondary structure prediction by free energy minimization is indispensable for analyzing structural RNAs and their interactions. These methods find the structure with the minimum free energy (MFE)...
20.
Bohnenkamper L
Algorithms Mol Biol
. 2024 Feb;
19(1):8.
PMID: 38414060
One of the most fundamental problems in genome rearrangement studies is the (genomic) distance problem. It is typically formulated as finding the minimum number of rearrangements under a model that...