Veronika Dubinkina
Overview
Explore the profile of Veronika Dubinkina including associated specialties, affiliations and a list of published articles.
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Articles
11
Citations
175
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Recent Articles
1.
Dubinkina V, Bhogale S, Hsieh P, Dibaeinia P, Nambiar A, Maslov S, et al.
Microbiol Spectr
. 2023 Nov;
12(1):e0253623.
PMID: 38018981
is a promising industrial chassis to produce biofuels and bioproducts due to its high tolerance to multiple environmental stresses such as low pH, heat, and other chemicals otherwise toxic for...
2.
Nambiar A, Dubinkina V, Liu S, Maslov S
PLoS Comput Biol
. 2023 Nov;
19(11):e1011563.
PMID: 37971967
mRNA levels of all genes in a genome is a critical piece of information defining the overall state of the cell in a given environmental condition. Being able to reconstruct...
3.
Jin X, Yu F, Yan J, Weakley A, Dubinkina V, Meng X, et al.
Nat Commun
. 2023 Jun;
14(1):3510.
PMID: 37316519
Microbial community function depends on both taxonomic composition and spatial organization. While composition of the human gut microbiome has been deeply characterized, less is known about the organization of microbes...
4.
Rashid F, Dubinkina V, Ahmad S, Maslov S, Irudayaraj J
Toxics
. 2023 Mar;
11(3).
PMID: 36977046
Alterations of the normal gut microbiota can cause various human health concerns. Environmental chemicals are one of the drivers of such disturbances. The aim of our study was to examine...
5.
Nande A, Dubinkina V, Ravasio R, Zhang G, Berman G
Front Behav Neurosci
. 2022 Apr;
16:835753.
PMID: 35464140
In almost all animals, the transfer of information from the brain to the motor circuitry is facilitated by a relatively small number of neurons, leading to a constraint on the...
6.
Wang Z, Goyal A, Dubinkina V, George A, Wang T, Fridman Y, et al.
Nat Commun
. 2021 Nov;
12(1):6661.
PMID: 34795267
Many microbes grow diauxically, utilizing the available resources one at a time rather than simultaneously. The properties of communities of microbes growing diauxically remain poorly understood, largely due to a...
7.
Xia F, Allen J, Balaprakash P, Brettin T, Garcia-Cardona C, Clyde A, et al.
Brief Bioinform
. 2021 Sep;
23(1).
PMID: 34524425
To enable personalized cancer treatment, machine learning models have been developed to predict drug response as a function of tumor and drug features. However, most algorithm development efforts have relied...
8.
Goyal A, Wang T, Dubinkina V, Maslov S
Nat Commun
. 2021 Feb;
12(1):1335.
PMID: 33637740
Understanding a complex microbial ecosystem such as the human gut microbiome requires information about both microbial species and the metabolites they produce and secrete. These metabolites are exchanged via a...
9.
Wang T, Goyal A, Dubinkina V, Maslov S
PLoS Comput Biol
. 2019 Dec;
15(12):e1007524.
PMID: 31856158
The human gut microbiome is a complex ecosystem, in which hundreds of microbial species and metabolites coexist, in part due to an extensive network of cross-feeding interactions. However, both the...
10.
Dubinkina V, Fridman Y, Pandey P, Maslov S
Elife
. 2019 Nov;
8.
PMID: 31756158
Microbial communities routinely have several possible species compositions or community states observed for the same environmental parameters. Changes in these parameters can trigger abrupt and persistent transitions (regime shifts) between...