Scott Cain
Overview
Explore the profile of Scott Cain including associated specialties, affiliations and a list of published articles.
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Articles
16
Citations
1002
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0
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Recent Articles
1.
Gill E, Jia B, Murall C, Poujol R, Anwar M, John N, et al.
Microb Genom
. 2024 Oct;
10(10).
PMID: 39401061
The COVID-19 pandemic led to a large global effort to sequence SARS-CoV-2 genomes from patient samples to track viral evolution and inform the public health response. Millions of SARS-CoV-2 genome...
2.
Diesh C, Buels R, Stevens G, Bridge C, Cain S, Stein L, et al.
Curr Protoc
. 2024 Aug;
4(8):e1120.
PMID: 39126338
JBrowse 2 is a modular genome browser that can visualize many common genomic file formats. While JBrowse 2 supports a variety of different usages, it is particularly suited for deployment...
3.
Gill E, Jia B, Murall C, Poujol R, Anwar M, John N, et al.
ArXiv
. 2024 May;
PMID: 38764594
The COVID-19 pandemic led to a large global effort to sequence SARS-CoV-2 genomes from patient samples to track viral evolution and inform public health response. Millions of SARS-CoV-2 genome sequences...
4.
Sternberg P, Van Auken K, Wang Q, Wright A, Yook K, Zarowiecki M, et al.
Genetics
. 2024 Apr;
227(1).
PMID: 38573366
WormBase has been the major repository and knowledgebase of information about the genome and genetics of Caenorhabditis elegans and other nematodes of experimental interest for over 2 decades. We have...
5.
Wright A, Wilkinson M, Mungall C, Cain S, Richards S, Sternberg P, et al.
Brief Bioinform
. 2024 Mar;
25(3).
PMID: 38555475
The lack of interoperable data standards among reference genome data-sharing platforms inhibits cross-platform analysis while increasing the risk of data provenance loss. Here, we describe the FAIR bioHeaders Reference genome...
6.
Wright A, Wilkinson M, Mungall C, Cain S, Richards S, Sternberg P, et al.
bioRxiv
. 2023 Dec;
PMID: 38076838
The lack of interoperable data standards among reference genome data-sharing platforms inhibits cross-platform analysis while increasing the risk of data provenance loss. Here, we describe the FAIR-bioHeaders Reference genome (FHR),...
7.
Diesh C, Stevens G, Xie P, De Jesus Martinez T, Hershberg E, Leung A, et al.
Genome Biol
. 2023 Apr;
24(1):74.
PMID: 37069644
We present JBrowse 2, a general-purpose genome annotation browser offering enhanced visualization of complex structural variation and evolutionary relationships. It retains core features of JBrowse while adding new views for...
8.
De Jesus Martinez T, Hershberg E, Guo E, Stevens G, Diesh C, Xie P, et al.
Bioinformatics
. 2023 Jan;
39(1).
PMID: 36648320
Motivation: JBrowse Jupyter is a package that aims to close the gap between Python programming and genomic visualization. Web-based genome browsers are routinely used for publishing and inspecting genome annotations....
9.
Davis P, Zarowiecki M, Arnaboldi V, Becerra A, Cain S, Chan J, et al.
Genetics
. 2022 Feb;
220(4).
PMID: 35134929
WormBase (www.wormbase.org) is the central repository for the genetics and genomics of the nematode Caenorhabditis elegans. We provide the research community with data and tools to facilitate the use of...
10.
Harris T, Arnaboldi V, Cain S, Chan J, Chen W, Cho J, et al.
Nucleic Acids Res
. 2019 Oct;
48(D1):D762-D767.
PMID: 31642470
WormBase (https://wormbase.org/) is a mature Model Organism Information Resource supporting researchers using the nematode Caenorhabditis elegans as a model system for studies across a broad range of basic biological processes....