Pawel Gorecki
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Explore the profile of Pawel Gorecki including associated specialties, affiliations and a list of published articles.
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27
Citations
675
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Recent Articles
1.
Ciach M, Pawlowska J, Gorecki P, Muszewska A
Evol Lett
. 2024 Aug;
8(4):526-538.
PMID: 39100235
Numerous studies have been devoted to individual cases of horizontally acquired genes in fungi. It has been shown that such genes expand the hosts' metabolic capabilities and contribute to their...
2.
Wagle S, Markin A, Gorecki P, Anderson T, Eulenstein O
J Comput Biol
. 2024 Apr;
31(4):312-327.
PMID: 38634854
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3.
Gorecki P, Rutecka N, Mykowiecka A, Paszek J
Algorithms Mol Biol
. 2024 Feb;
19(1):7.
PMID: 38355611
We present a novel problem, called MetaEC, which aims to infer gene-species assignments in a collection of partially leaf-labeled gene trees labels by minimizing the size of duplication episode clustering...
4.
Wawerka M, Dabkowski D, Rutecka N, Mykowiecka A, Gorecki P
Algorithms Mol Biol
. 2022 May;
17(1):11.
PMID: 35590416
Background: Phylogenetic networks are mathematical models of evolutionary processes involving reticulate events such as hybridization, recombination, or horizontal gene transfer. One of the crucial notions in phylogenetic network modelling is...
5.
Paszek J, Markin A, Gorecki P, Eulenstein O
J Comput Biol
. 2021 Jun;
28(8):758-773.
PMID: 34125600
The duplication-loss-coalescence (DLC) parsimony model is invaluable for analyzing the complex scenarios of concurrent duplication loss and deep coalescence events in the evolution of gene families. However, inferring such scenarios...
6.
Gorecki P, Markin A, Eulenstein O
BMC Evol Biol
. 2020 Oct;
20(Suppl 1):136.
PMID: 33115401
Background: Solving median tree problems under tree reconciliation costs is a classic and well-studied approach for inferring species trees from collections of discordant gene trees. These problems are NP-hard, and...
7.
Paszek J, Tiuryn J, Gorecki P
Comput Biol Chem
. 2020 Oct;
89:107260.
PMID: 33038778
Background: The genomic duplication study is fundamental to understand the process of evolution. In evolutionary molecular biology, many approaches focus on discovering the occurrences of gene duplications and multiple gene...
8.
Gorecki P, Eulenstein O, Tiuryn J
IEEE/ACM Trans Comput Biol Bioinform
. 2019 Jun;
18(6):2125-2135.
PMID: 31150345
Tree reconciliation costs are a popular choice to account for the discordance between the evolutionary history of a gene family (i.e., a gene tree), and the species tree through which...
9.
Dabkowski D, Tabaszewski P, Gorecki P
J Bioinform Comput Biol
. 2018 Nov;
16(5):1840021.
PMID: 30419782
Metagenomic studies identify the species present in an environmental sample usually by using procedures that match molecular sequences, e.g. genes, with the species taxonomy. Here, we first formulate the problem...
10.
Mykowiecka A, Gorecki P
IEEE/ACM Trans Comput Biol Bioinform
. 2018 Jul;
PMID: 29990287
Based on the classical non-parametric bootstrapping for phylogenetic trees, we propose a novel bootstrap method to define support for gene duplication and speciation events. By comparing bootstrap gene trees to...