Jaroslaw Paszek
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Explore the profile of Jaroslaw Paszek including associated specialties, affiliations and a list of published articles.
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7
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11
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Recent Articles
1.
Gorecki P, Rutecka N, Mykowiecka A, Paszek J
Algorithms Mol Biol
. 2024 Feb;
19(1):7.
PMID: 38355611
We present a novel problem, called MetaEC, which aims to infer gene-species assignments in a collection of partially leaf-labeled gene trees labels by minimizing the size of duplication episode clustering...
2.
Paszek J, Markin A, Gorecki P, Eulenstein O
J Comput Biol
. 2021 Jun;
28(8):758-773.
PMID: 34125600
The duplication-loss-coalescence (DLC) parsimony model is invaluable for analyzing the complex scenarios of concurrent duplication loss and deep coalescence events in the evolution of gene families. However, inferring such scenarios...
3.
Paszek J, Tiuryn J, Gorecki P
Comput Biol Chem
. 2020 Oct;
89:107260.
PMID: 33038778
Background: The genomic duplication study is fundamental to understand the process of evolution. In evolutionary molecular biology, many approaches focus on discovering the occurrences of gene duplications and multiple gene...
4.
Paszek J, Gorecki P
BMC Genomics
. 2018 May;
19(Suppl 5):288.
PMID: 29745844
Background: One of evolutionary molecular biology fundamental issues is to discover genomic duplication events and their correspondence to the species tree. Such events can be reconstructed by clustering single gene...
5.
Paszek J, Gorecki P
IEEE/ACM Trans Comput Biol Bioinform
. 2017 May;
15(5):1515-1524.
PMID: 28541223
An important issue in evolutionary molecular biology is to discover genomic duplication episodes and their correspondence to the species tree. Existing approaches vary in the two fundamental aspects: the choice...
6.
Pawel Gorecki P, Paszek J, Eulenstein O
IEEE/ACM Trans Comput Biol Bioinform
. 2016 Feb;
14(5):1002-1012.
PMID: 26887001
The minimizing-deep-coalescence (MDC) approach infers a median (species) tree for a given set of gene trees under the deep coalescence cost. This cost accounts for the minimum number of deep...
7.
Paszek J, Gorecki P
BMC Genomics
. 2016 Jan;
17 Suppl 1:15.
PMID: 26818591
Background: Discovering the location of gene duplications and multiple gene duplication episodes is a fundamental issue in evolutionary molecular biology. The problem introduced by Guigó et al. in 1996 is...