Oliver Eulenstein
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Explore the profile of Oliver Eulenstein including associated specialties, affiliations and a list of published articles.
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54
Citations
400
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Recent Articles
1.
Banerjee P, Eulenstein O, Friedberg I
Bioinform Adv
. 2024 Jun;
4(1):vbae089.
PMID: 38911822
Motivation: Genomic islands (GEIs) are clusters of genes in bacterial genomes that are typically acquired by horizontal gene transfer. GEIs play a crucial role in the evolution of bacteria by...
2.
Wagle S, Markin A, Gorecki P, Anderson T, Eulenstein O
J Comput Biol
. 2024 Apr;
31(4):312-327.
PMID: 38634854
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3.
Grover S, Markin A, Anderson T, Eulenstein O
Bioinformatics
. 2023 Jun;
39(39 Suppl 1):i177-i184.
PMID: 37387175
The classic quantitative measure of phylogenetic diversity (PD) has been used to address problems in conservation biology, microbial ecology, and evolutionary biology. PD is the minimum total length of the...
4.
Markin A, Wagle S, Grover S, Vincent Baker A, Eulenstein O, Anderson T
Syst Biol
. 2023 May;
72(5):1052-1063.
PMID: 37208300
The use of next-generation sequencing technology has enabled phylogenetic studies with hundreds of thousands of taxa. Such large-scale phylogenies have become a critical component in genomic epidemiology in pathogens such...
5.
Markin A, Wagle S, Anderson T, Eulenstein O
Bioinformatics
. 2022 Feb;
38(8):2144-2152.
PMID: 35150239
Motivation: A phylogenetic network is a powerful model to represent entangled evolutionary histories with both divergent (speciation) and convergent (e.g. hybridization, reassortment, recombination) evolution. The standard approach to inference of...
6.
Paszek J, Markin A, Gorecki P, Eulenstein O
J Comput Biol
. 2021 Jun;
28(8):758-773.
PMID: 34125600
The duplication-loss-coalescence (DLC) parsimony model is invaluable for analyzing the complex scenarios of concurrent duplication loss and deep coalescence events in the evolution of gene families. However, inferring such scenarios...
7.
Markin A, Eulenstein O
Bioinformatics
. 2021 May;
37(22):4064-4074.
PMID: 34048529
Motivation: The classic multispecies coalescent (MSC) model provides the means for theoretical justification of incomplete lineage sorting-aware species tree inference methods. This has motivated an extensive body of work on...
8.
Eulenstein O, Ding Q, Al-Mubaid H
J Bioinform Comput Biol
. 2021 Mar;
19(1):2102001.
PMID: 33641638
No abstract available.
9.
Nguyen H, Markin A, Friedberg I, Eulenstein O
Bioinformatics
. 2020 Dec;
36(Suppl_2):i668-i674.
PMID: 33381825
Motivation: The evolution of complexity is one of the most fascinating and challenging problems in modern biology, and tracing the evolution of complex traits is an open problem. In bacteria,...
10.
Gorecki P, Markin A, Eulenstein O
BMC Evol Biol
. 2020 Oct;
20(Suppl 1):136.
PMID: 33115401
Background: Solving median tree problems under tree reconciliation costs is a classic and well-studied approach for inferring species trees from collections of discordant gene trees. These problems are NP-hard, and...