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Nasim Sanati

Explore the profile of Nasim Sanati including associated specialties, affiliations and a list of published articles. Areas
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Citations 807
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Recent Articles
1.
Huffman A, Ong E, Brunson T, Sanati N, Zheng J, Masci A, et al.
CEUR Workshop Proc . 2024 Nov; 3603:1-12. PMID: 39583065
ImmPort, the world's largest repository of immunology data, includes many vaccine immune response datasets. ImmPort maps the metadata of these studies to ontology and database schema. As of February 28,...
2.
Beavers D, Brunson T, Sanati N, Matthews L, Haw R, Shorser S, et al.
Curr Protoc . 2023 Jul; 3(7):e845. PMID: 37467006
Understudied or dark proteins have the potential to shed light on as-yet undiscovered molecular mechanisms that underlie phenotypes and suggest innovative therapeutic approaches for many diseases. The Reactome-IDG (Illuminating the...
3.
Brunson T, Sanati N, Matthews L, Haw R, Beavers D, Shorser S, et al.
bioRxiv . 2023 Jun; PMID: 37333417
Limited knowledge about a substantial portion of protein coding genes, known as "dark" proteins, hinders our understanding of their functions and potential therapeutic applications. To address this, we leveraged Reactome,...
4.
Brunson T, Sanati N, Huffman A, Masci A, Zheng J, Cooke M, et al.
Front Immunol . 2023 May; 14:1141030. PMID: 37180100
Host responses to vaccines are complex but important to investigate. To facilitate the study, we have developed a tool called Vaccine Induced Gene Expression Analysis Tool (VIGET), with the aim...
5.
Gillespie M, Jassal B, Stephan R, Milacic M, Rothfels K, Senff-Ribeiro A, et al.
Nucleic Acids Res . 2021 Nov; 50(D1):D687-D692. PMID: 34788843
The Reactome Knowledgebase (https://reactome.org), an Elixir core resource, provides manually curated molecular details across a broad range of physiological and pathological biological processes in humans, including both hereditary and acquired...
6.
Huffman A, Masci A, Zheng J, Sanati N, Brunson T, Wu G, et al.
J Biomed Semantics . 2021 Aug; 12(1):18. PMID: 34454610
Background: With COVID-19 still in its pandemic stage, extensive research has generated increasing amounts of data and knowledge. As many studies are published within a short span of time, we...
7.
Berke K, Sun P, Ong E, Sanati N, Huffman A, Brunson T, et al.
Front Immunol . 2021 Mar; 12:639491. PMID: 33777032
Vaccines stimulate various immune factors critical to protective immune responses. However, a comprehensive picture of vaccine-induced immune factors and pathways have not been systematically collected and analyzed. To address this...
8.
Sanati N, Iancu O, Wu G, Jacobs J, McWeeney S
Front Genet . 2018 Jun; 9:183. PMID: 29910823
The heterogeneity in head and neck squamous cell carcinoma (HNSCC) has made reliable stratification extremely challenging. Behavioral risk factors such as smoking and alcohol consumption contribute to this heterogeneity. To...