Micah Hamady
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Explore the profile of Micah Hamady including associated specialties, affiliations and a list of published articles.
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36
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Recent Articles
1.
Nemergut D, Costello E, Hamady M, Lozupone C, Jiang L, Schmidt S, et al.
Environ Microbiol
. 2011 Jan;
13(1):135-144.
PMID: 21199253
Bacteria control major nutrient cycles and directly influence plant, animal and human health. However, we know relatively little about the forces shaping their large-scale ecological ranges. Here, we reveal patterns...
2.
Costello E, Lauber C, Hamady M, Fierer N, Gordon J, Knight R
Science
. 2009 Nov;
326(5960):1694-7.
PMID: 19892944
Elucidating the biogeography of bacterial communities on the human body is critical for establishing healthy baselines from which to detect differences associated with diseases. To obtain an integrated view of...
3.
Hamady M, Lozupone C, Knight R
ISME J
. 2009 Aug;
4(1):17-27.
PMID: 19710709
Next-generation sequencing techniques, and PhyloChip, have made simultaneous phylogenetic analyses of hundreds of microbial communities possible. Insight into community structure has been limited by the inability to integrate and visualize...
4.
Hildebrandt M, Hoffmann C, Sherrill-Mix S, Keilbaugh S, Hamady M, Chen Y, et al.
Gastroenterology
. 2009 Aug;
137(5):1716-24.e1-2.
PMID: 19706296
Background & Aims: The composition of the gut microbiome is affected by host phenotype, genotype, immune function, and diet. Here, we used the phenotype of RELMbeta knockout (KO) mice to...
5.
Crawford P, Crowley J, Sambandam N, Muegge B, Costello E, Hamady M, et al.
Proc Natl Acad Sci U S A
. 2009 Jun;
106(27):11276-81.
PMID: 19549860
Studies in mice indicate that the gut microbiota promotes energy harvest and storage from components of the diet when these components are plentiful. Here we examine how the microbiota shapes...
6.
Lauber C, Hamady M, Knight R, Fierer N
Appl Environ Microbiol
. 2009 Jun;
75(15):5111-20.
PMID: 19502440
Soils harbor enormously diverse bacterial populations, and soil bacterial communities can vary greatly in composition across space. However, our understanding of the specific changes in soil bacterial community structure that...
7.
Bowers R, Lauber C, Wiedinmyer C, Hamady M, Hallar A, Fall R, et al.
Appl Environ Microbiol
. 2009 Jun;
75(15):5121-30.
PMID: 19502432
Bacteria and fungi are ubiquitous in the atmosphere. The diversity and abundance of airborne microbes may be strongly influenced by atmospheric conditions or even influence atmospheric conditions themselves by acting...
8.
Hamady M, Knight R
Genome Res
. 2009 Apr;
19(7):1141-52.
PMID: 19383763
High-throughput sequencing studies and new software tools are revolutionizing microbial community analyses, yet the variety of experimental and computational methods can be daunting. In this review, we discuss some of...
9.
Zaneveld J, Hamady M, Sueoka N, Knight R
Methods Mol Biol
. 2009 Apr;
537:207-32.
PMID: 19378146
The analysis of DNA composition and codon usage reveals many factors that influence the evolution of genes and genomes. In this chapter, we show how to use CodonExplorer, a web...
10.
Hamady M, Wilson S, Zaneveld J, Sueoka N, Knight R
Bioinformatics
. 2009 Mar;
25(10):1331-2.
PMID: 19279067
DNA composition in general, and codon usage in particular, is crucial for understanding gene function and evolution. CodonExplorer, available online at http://bmf.colorado.edu/codonexplorer/, is an online tool and interactive database that...