Kim Philipp Jablonski
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Explore the profile of Kim Philipp Jablonski including associated specialties, affiliations and a list of published articles.
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13
Citations
762
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Recent Articles
1.
Fuhrmann L, Jablonski K, Topolsky I, Batavia A, Borgsmuller N, Baykal P, et al.
Gigascience
. 2024 Sep;
13.
PMID: 39347649
The large amount and diversity of viral genomic datasets generated by next-generation sequencing technologies poses a set of challenges for computational data analysis workflows, including rigorous quality control, scaling to...
2.
Jablonski K, Beerenwinkel N
Bioinformatics
. 2023 Aug;
39(8).
PMID: 37610338
Motivation: Gene set enrichment methods are a common tool to improve the interpretability of gene lists as obtained, for example, from differential gene expression analyses. They are based on computing...
3.
Nadeau S, Vaughan T, Beckmann C, Topolsky I, Chen C, Hodcroft E, et al.
Sci Transl Med
. 2022 Nov;
15(680):eabn7979.
PMID: 36346321
Genome sequences from evolving infectious pathogens allow quantification of case introductions and local transmission dynamics. We sequenced 11,357 severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) genomes from Switzerland in 2020-the...
4.
Jahn K, Dreifuss D, Topolsky I, Kull A, Ganesanandamoorthy P, Fernandez-Cassi X, et al.
Nat Microbiol
. 2022 Jul;
7(8):1151-1160.
PMID: 35851854
The continuing emergence of SARS-CoV-2 variants of concern and variants of interest emphasizes the need for early detection and epidemiological surveillance of novel variants. We used genomic sequencing of 122...
5.
Diesend J, Birkedal U, Kjellin J, Zhang J, Jablonski K, Soderbom F, et al.
Sci Rep
. 2022 Feb;
12(1):1952.
PMID: 35121764
A hallmark of ribosomal RNA (rRNA) are 2'-O-methyl groups that are introduced sequence specifically by box C/D small nucleolar RNAs (snoRNAs) in ribonucleoprotein particles. Most data on this chemical modification...
6.
Jablonski K, Carron L, Mozziconacci J, Forne T, Hutt M, Lesne A
Hum Genomics
. 2022 Jan;
16(1):2.
PMID: 35016721
Background: Genome-wide association studies have identified statistical associations between various diseases, including cancers, and a large number of single-nucleotide polymorphisms (SNPs). However, they provide no direct explanation of the mechanisms...
7.
Jablonski K, Pirkl M, Cevid D, Buhlmann P, Beerenwinkel N
Bioinformatics
. 2021 Dec;
38(6):1550-1559.
PMID: 34927666
Motivation: Signaling pathways control cellular behavior. Dysregulated pathways, for example, due to mutations that cause genes and proteins to be expressed abnormally, can lead to diseases, such as cancer. Results:...
8.
Chen C, Nadeau S, Topolsky I, Manceau M, Huisman J, Jablonski K, et al.
Epidemics
. 2021 Sep;
37:100480.
PMID: 34488035
Background: In December 2020, the United Kingdom (UK) reported a SARS-CoV-2 Variant of Concern (VoC) which is now named B.1.1.7. Based on initial data from the UK and later data...
9.
Fuhrmann L, Jablonski K, Beerenwinkel N
Curr Opin Virol
. 2021 Jun;
49:157-163.
PMID: 34153841
The genetic diversity of virus populations within their hosts is known to influence disease progression, treatment outcome, drug resistance, cell tropism, and transmission risk, and the study of dynamic changes...
10.
Molder F, Jablonski K, Letcher B, Hall M, Tomkins-Tinch C, Sochat V, et al.
F1000Res
. 2021 May;
10:33.
PMID: 34035898
Data analysis often entails a multitude of heterogeneous steps, from the application of various command line tools to the usage of scripting languages like R or Python for the generation...