Kelsey N Thompson
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Explore the profile of Kelsey N Thompson including associated specialties, affiliations and a list of published articles.
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Recent Articles
1.
Ghazi A, Thompson K, Bhosle A, Mei Z, Yan Y, Wang F, et al.
bioRxiv
. 2025 Jan;
PMID: 39829854
Genetic and genomic variation among microbial strains can dramatically influence their phenotypes and environmental impact, including on human health. However, inferential methods for quantifying these differences have been lacking. Strain-level...
2.
Nickols W, Kuntz T, Shen J, Maharjan S, Mallick H, Franzosa E, et al.
bioRxiv
. 2024 Dec;
PMID: 39713460
A key question in microbial community analysis is determining which microbial features are associated with community properties such as environmental or health phenotypes. This statistical task is impeded by characteristics...
3.
Wagner R, Buettner J, Heni M, Fritsche L, Kullmann S, Wagmuller M, et al.
BMC Med
. 2024 Nov;
22(1):558.
PMID: 39593091
Background: The potential impact of specific food additives, common in Western diets, on the risk of developing type 2 diabetes is not well understood. This study focuses on carrageenan, a...
4.
Nickols W, McIver L, Walsh A, Zhang Y, Nearing J, Asnicar F, et al.
bioRxiv
. 2024 Nov;
PMID: 39574575
Non-human-associated microbial communities play important biological roles, but they remain less understood than human-associated communities. Here, we assess the impact of key environmental sample properties on a variety of state-of-the-art...
5.
Manghi P, Bhosle A, Wang K, Marconi R, Selma-Royo M, Ricci L, et al.
Nat Microbiol
. 2024 Nov;
9(12):3120-3134.
PMID: 39558133
Although diet is a substantial determinant of the human gut microbiome, the interplay between specific foods and microbial community structure remains poorly understood. Coffee is a habitually consumed beverage with...
6.
Branck T, Hu Z, Nickols W, Walsh A, Bhosle A, Short M, et al.
ISME J
. 2024 Oct;
18(1).
PMID: 39394961
The gut microbiome of companion animals is relatively underexplored, despite its relevance to animal health, pet owner health, and basic microbial community biology. Here, we provide the most comprehensive analysis...
7.
Thompson K, Bonham K, Ilott N, Britton G, Colmenero P, Bullers S, et al.
Sci Transl Med
. 2023 Jul;
15(706):eabn4722.
PMID: 37494472
Musculoskeletal diseases affect up to 20% of adults worldwide. The gut microbiome has been implicated in inflammatory conditions, but large-scale metagenomic evaluations have not yet traced the routes by which...
8.
Nguyen L, Okin D, Drew D, Battista V, Jesudasen S, Kuntz T, et al.
Genome Med
. 2023 Jul;
15(1):49.
PMID: 37438797
Background: The gut microbiome is a critical modulator of host immunity and is linked to the immune response to respiratory viral infections. However, few studies have gone beyond describing broad...
9.
Wang Y, Thompson K, Yan Y, Short M, Zhang Y, Franzosa E, et al.
Microbiome
. 2023 Jun;
11(1):131.
PMID: 37312147
Background: Characterization of microbial activity is essential to the understanding of the basic biology of microbial communities, as the function of a microbiome is defined by its biochemically active ("viable")...
10.
Blanco-Miguez A, Beghini F, Cumbo F, McIver L, Thompson K, Zolfo M, et al.
Nat Biotechnol
. 2023 Feb;
41(11):1633-1644.
PMID: 36823356
Metagenomic assembly enables new organism discovery from microbial communities, but it can only capture few abundant organisms from most metagenomes. Here we present MetaPhlAn 4, which integrates information from metagenome...