Kate Rosenbloom
Overview
Explore the profile of Kate Rosenbloom including associated specialties, affiliations and a list of published articles.
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7
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7000
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Recent Articles
1.
Vivian J, Rao A, Nothaft F, Ketchum C, Armstrong J, Novak A, et al.
Nat Biotechnol
. 2017 Apr;
35(4):314-316.
PMID: 28398314
No abstract available.
2.
Rosenbloom K, Taylor J, Schaeffer S, Kent J, Haussler D, Miller W
Methods Mol Biol
. 2008 Jul;
422:133-44.
PMID: 18629665
The UC Santa Cruz Genome Browser provides a number of resources that can be used for phylogenomic studies, including (1) whole-genome sequence data from a number of vertebrate species, (2)...
3.
Miller W, Rosenbloom K, Hardison R, Hou M, Taylor J, Raney B, et al.
Genome Res
. 2007 Nov;
17(12):1797-808.
PMID: 17984227
This article describes a set of alignments of 28 vertebrate genome sequences that is provided by the UCSC Genome Browser. The alignments can be viewed on the Human Genome Browser...
4.
Birney E, Stamatoyannopoulos J, Dutta A, Guigo R, Gingeras T, Margulies E, et al.
Nature
. 2007 Jun;
447(7146):799-816.
PMID: 17571346
We report the generation and analysis of functional data from multiple, diverse experiments performed on a targeted 1% of the human genome as part of the pilot phase of the...
5.
Pedersen J, Bejerano G, Siepel A, Rosenbloom K, Lindblad-Toh K, Lander E, et al.
PLoS Comput Biol
. 2006 Apr;
2(4):e33.
PMID: 16628248
The discoveries of microRNAs and riboswitches, among others, have shown functional RNAs to be biologically more important and genomically more prevalent than previously anticipated. We have developed a general comparative...
6.
Siepel A, Bejerano G, Pedersen J, Hinrichs A, Hou M, Rosenbloom K, et al.
Genome Res
. 2005 Jul;
15(8):1034-50.
PMID: 16024819
We have conducted a comprehensive search for conserved elements in vertebrate genomes, using genome-wide multiple alignments of five vertebrate species (human, mouse, rat, chicken, and Fugu rubripes). Parallel searches have...
7.
Blanchette M, Kent W, Riemer C, Elnitski L, Smit A, Roskin K, et al.
Genome Res
. 2004 Apr;
14(4):708-15.
PMID: 15060014
We define a "threaded blockset," which is a novel generalization of the classic notion of a multiple alignment. A new computer program called TBA (for "threaded blockset aligner") builds a...