Julian Uszkoreit
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Explore the profile of Julian Uszkoreit including associated specialties, affiliations and a list of published articles.
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44
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4797
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Recent Articles
1.
Lux D, Marcus-Alic K, Eisenacher M, Uszkoreit J
Brief Bioinform
. 2025 Jan;
26(1).
PMID: 39757114
Due to computational resource limitations, in mass spectrometry based proteomics only a limited set of peptide sequences is used for the matching against measured spectra. We present an approach to...
2.
Uszkoreit J, Marcus K, Eisenacher M
Methods Mol Biol
. 2024 Oct;
2859:53-64.
PMID: 39436596
Protein inference is an often neglected though crucial step in most proteomic experiments. In the bottom-up proteomic approach, the actual molecules of interest, the proteins, are digested into peptides before...
3.
Uszkoreit J, Palmblad M, Schwammle V
Expert Rev Proteomics
. 2024 Feb;
21(1-3):9-11.
PMID: 38362700
No abstract available.
4.
Bouyssie D, Altiner P, Capella-Gutierrez S, Fernandez J, Hagemeijer Y, Horvatovich P, et al.
J Proteome Res
. 2023 Dec;
23(1):418-429.
PMID: 38038272
The inherent diversity of approaches in proteomics research has led to a wide range of software solutions for data analysis. These software solutions encompass multiple tools, each employing different algorithms...
5.
Rozanova S, Uszkoreit J, Schork K, Serschnitzki B, Eisenacher M, Tonges L, et al.
Biomolecules
. 2023 Mar;
13(3).
PMID: 36979426
Proteomic studies using mass spectrometry (MS)-based quantification are a main approach to the discovery of new biomarkers. However, a number of analytical conditions in front and during MS data acquisition...
6.
Neely B, Dorfer V, Martens L, Bludau I, Bouwmeester R, Degroeve S, et al.
J Proteome Res
. 2023 Feb;
22(3):681-696.
PMID: 36744821
In recent years machine learning has made extensive progress in modeling many aspects of mass spectrometry data. We brought together proteomics data generators, repository managers, and machine learning experts in...
7.
Schork K, Turewicz M, Uszkoreit J, Rahnenfuhrer J, Eisenacher M
PLoS One
. 2022 Oct;
17(10):e0276401.
PMID: 36269744
In bottom-up proteomics, proteins are enzymatically digested into peptides before measurement with mass spectrometry. The relationship between proteins and their corresponding peptides can be represented by bipartite graphs. We conduct...
8.
Bracht T, Kleefisch D, Schork K, Witzke K, Chen W, Bayer M, et al.
Int J Mol Sci
. 2022 Oct;
23(19).
PMID: 36232544
Chronic obstructive pulmonary disease (COPD) is a major risk factor for the development of lung adenocarcinoma (AC). AC often develops on underlying COPD; thus, the differentiation of both entities by...
9.
Krause K, Eggers B, Uszkoreit J, Eulitz S, Rehmann R, Guttsches A, et al.
Neuropathol Appl Neurobiol
. 2022 Sep;
49(1):e12853.
PMID: 36180966
Aims: Target skeletal muscle fibres - defined by different concentric areas in oxidative enzyme staining - can occur in patients with neurogenic muscular atrophy. Here, we used our established hypothesis-free...
10.
Uszkoreit J, Barkovits K, Pacharra S, Pfeiffer K, Steinbach S, Marcus K, et al.
Data Brief
. 2022 Jul;
43:108435.
PMID: 35845101
In this article, we present a data dependent acquisition (DDA) dataset which was generated as a reference and ground truth quantitative dataset. While initially used to compare samples measured with...