Jaap Heringa
Overview
Explore the profile of Jaap Heringa including associated specialties, affiliations and a list of published articles.
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Articles
93
Citations
5071
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0
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Recent Articles
1.
Rubio-Alarcon C, Stelloo E, Vessies D, van t Erve I, Mekkes N, Swennenhuis J, et al.
J Mol Diagn
. 2024 Sep;
26(12):1065-1080.
PMID: 39332629
Structural variants (SVs) caused by chromosomal rearrangements in common fragile sites or long interspersed nuclear element (LINE) retrotranspositions are highly prevalent in colorectal cancer. However, methodology for the targeted detection...
2.
Lakbir S, Buranelli C, Meijer G, Heringa J, Fijneman R, Abeln S
Bioinformatics
. 2024 Sep;
40(Suppl 2):ii37-ii44.
PMID: 39230704
Motivation: Genomic instability is a hallmark of cancer, leading to many somatic alterations. Identifying which alterations have a system-wide impact is a challenging task. Nevertheless, this is an essential first...
3.
Liu T, Feenstra K, Huang Z, Heringa J
Bioinformatics
. 2023 Dec;
40(1).
PMID: 38147362
Motivation: Up-to-date pathway knowledge is usually presented in scientific publications for human reading, making it difficult to utilize these resources for semantic integration and computational analysis of biological pathways. We...
4.
Gavai A, Bouzembrak Y, Mu W, Martin F, Kaliyaperumal R, Soest J, et al.
NPJ Sci Food
. 2023 Oct;
7(1):57.
PMID: 37857631
No abstract available.
5.
Gavai A, Bouzembrak Y, Mu W, Martin F, Kaliyaperumal R, Soest J, et al.
NPJ Sci Food
. 2023 Sep;
7(1):46.
PMID: 37658060
Ensuring safe and healthy food is a big challenge due to the complexity of food supply chains and their vulnerability to many internal and external factors, including food fraud. Recent...
6.
Liu T, Lan G, Feenstra K, Huang Z, Heringa J
Sci Rep
. 2022 Nov;
12(1):18977.
PMID: 36347868
Scientific publications present biological relationships but are structured for human reading, making it difficult to use this resource for semantic integration and querying. Existing databases, on the other hand, are...
7.
Lakbir S, Lahoz S, Cuatrecasas M, Camps J, Glas R, Heringa J, et al.
Eur J Cancer
. 2022 Nov;
177:94-102.
PMID: 36334560
Background: Clinically implemented prognostic biomarkers are lacking for the 80% of colorectal cancers (CRCs) that exhibit chromosomal instability (CIN). CIN is characterised by chromosome segregation errors and double-strand break repair...
8.
Stringer B, de Ferrante H, Abeln S, Heringa J, Feenstra K, Haydarlou R
Bioinformatics
. 2022 Feb;
38(8):2111-2118.
PMID: 35150231
Motivation: The interactions between proteins and other molecules are essential to many biological and cellular processes. Experimental identification of interface residues is a time-consuming, costly and challenging task, while protein...
9.
Hou Q, Stringer B, Waury K, Capel H, Haydarlou R, Xue F, et al.
Bioinformatics
. 2021 May;
37(20):3421-3427.
PMID: 33974039
Motivation: Antibodies play an important role in clinical research and biotechnology, with their specificity determined by the interaction with the antigen's epitope region, as a special type of protein-protein interaction...
10.
Liu T, Pan X, Wang X, Feenstra K, Heringa J, Huang Z
Health Inf Sci Syst
. 2020 Dec;
9(1):3.
PMID: 33262885
Gut microbiota produce and modulate the production of neurotransmitters which have been implicated in mental disorders. Neurotransmitters may act as 'matchmaker' between gut microbiota imbalance and mental disorders. Most of...