Dylan Fong
Overview
Explore the profile of Dylan Fong including associated specialties, affiliations and a list of published articles.
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6
Citations
197
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Recent Articles
1.
Mei Y, Gosztyla M, Tan X, Dozier L, Wilkinson B, McKetney J, et al.
Cell Syst
. 2025 Mar;
:101204.
PMID: 40054464
The molecular composition of the excitatory synapse is incompletely defined due to its dynamic nature across developmental stages and neuronal populations. To address this gap, we apply proteomic mass spectrometry...
2.
Hu M, Alkhairy S, Lee I, Pillich R, Fong D, Smith K, et al.
Nat Methods
. 2024 Nov;
22(1):82-91.
PMID: 39609565
Gene set enrichment is a mainstay of functional genomics, but it relies on gene function databases that are incomplete. Here we evaluate five large language models (LLMs) for their ability...
3.
Hu M, Alkhairy S, Lee I, Pillich R, Fong D, Smith K, et al.
ArXiv
. 2023 Sep;
PMID: 37731657
Gene set analysis is a mainstay of functional genomics, but it relies on curated databases of gene functions that are incomplete. Here we evaluate five Large Language Models (LLMs) for...
4.
Pillich R, Chen J, Churas C, Fong D, Gyori B, Ideker T, et al.
Bioinformatics
. 2023 Mar;
39(3).
PMID: 36882166
Motivation: The investigation of sets of genes using biological pathways is a common task for researchers and is supported by a wide variety of software tools. This type of analysis...
5.
Franz M, Lopes C, Fong D, Kucera M, Cheung M, Siper M, et al.
Bioinformatics
. 2023 Jan;
39(1).
PMID: 36645249
Summary: Cytoscape.js is an open-source JavaScript-based graph library. Its most common use case is as a visualization software component, so it can be used to render interactive graphs in a...
6.
Wong J, Franz M, Siper M, Fong D, Durupinar F, Dallago C, et al.
Elife
. 2021 Dec;
10.
PMID: 34860157
Making the knowledge contained in scientific papers machine-readable and formally computable would allow researchers to take full advantage of this information by enabling integration with other knowledge sources to support...
7.
Rodchenkov I, Babur O, Luna A, Aksoy B, Wong J, Fong D, et al.
Nucleic Acids Res
. 2019 Oct;
48(D1):D489-D497.
PMID: 31647099
Pathway Commons (https://www.pathwaycommons.org) is an integrated resource of publicly available information about biological pathways including biochemical reactions, assembly of biomolecular complexes, transport and catalysis events and physical interactions involving proteins,...