Igor Rodchenkov
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Explore the profile of Igor Rodchenkov including associated specialties, affiliations and a list of published articles.
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9
Citations
1193
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Recent Articles
1.
Wong J, Franz M, Siper M, Fong D, Durupinar F, Dallago C, et al.
Elife
. 2021 Dec;
10.
PMID: 34860157
Making the knowledge contained in scientific papers machine-readable and formally computable would allow researchers to take full advantage of this information by enabling integration with other knowledge sources to support...
2.
Rodchenkov I, Babur O, Luna A, Aksoy B, Wong J, Fong D, et al.
Nucleic Acids Res
. 2019 Oct;
48(D1):D489-D497.
PMID: 31647099
Pathway Commons (https://www.pathwaycommons.org) is an integrated resource of publicly available information about biological pathways including biochemical reactions, assembly of biomolecular complexes, transport and catalysis events and physical interactions involving proteins,...
3.
Demir E, Babur O, Rodchenkov I, Aksoy B, Fukuda K, Gross B, et al.
PLoS Comput Biol
. 2013 Sep;
9(9):e1003194.
PMID: 24068901
A rapidly growing corpus of formal, computable pathway information can be used to answer important biological questions including finding non-trivial connections between cellular processes, identifying significantly altered portions of the...
4.
Babur O, Aksoy B, Rodchenkov I, Sumer S, Sander C, Demir E
Bioinformatics
. 2013 Sep;
30(1):139-40.
PMID: 24045775
Motivation: BioPAX is a standard language for representing complex cellular processes, including metabolic networks, signal transduction and gene regulation. Owing to the inherent complexity of a BioPAX model, searching for...
5.
Rodchenkov I, Demir E, Sander C, Bader G
Bioinformatics
. 2013 Aug;
29(20):2659-60.
PMID: 23918249
Summary: BioPAX is a community-developed standard language for biological pathway data. A key functionality required for efficient BioPAX data exchange is validation-detecting errors and inconsistencies in BioPAX documents. The BioPAX...
6.
Cerami E, Gross B, Demir E, Rodchenkov I, Babur O, Anwar N, et al.
Nucleic Acids Res
. 2010 Nov;
39(Database issue):D685-90.
PMID: 21071392
Pathway Commons (http://www.pathwaycommons.org) is a collection of publicly available pathway data from multiple organisms. Pathway Commons provides a web-based interface that enables biologists to browse and search a comprehensive collection...
7.
Demir E, Cary M, Paley S, Fukuda K, Lemer C, Vastrik I, et al.
Nat Biotechnol
. 2010 Sep;
28(9):935-42.
PMID: 20829833
Biological Pathway Exchange (BioPAX) is a standard language to represent biological pathways at the molecular and cellular level and to facilitate the exchange of pathway data. The rapid growth of...
8.
Dietmann S, Lee W, Wong P, Rodchenkov I, Antonov A
Nucleic Acids Res
. 2010 Jun;
38(Web Server issue):W118-23.
PMID: 20529879
CCancer is an automatically collected database of gene lists, which were reported mostly by experimental studies in various biological and clinical contexts. At the moment, the database covers 3369 gene...
9.
Antonov A, Dietmann S, Rodchenkov I, Mewes H
Proteomics
. 2009 May;
9(10):2740-9.
PMID: 19405022
Recent advances in experimental technologies allow for the detection of a complete cell proteome. Proteins that are expressed at a particular cell state or in a particular compartment as well...