Denes Turei
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Explore the profile of Denes Turei including associated specialties, affiliations and a list of published articles.
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Articles
26
Citations
1563
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Recent Articles
1.
Paton V, Turei D, Ivanova O, Muller-Dott S, Rodriguez-Mier P, Venafra V, et al.
Bioinformatics
. 2025 Feb;
41(2).
PMID: 39907203
Summary: We present NetworkCommons, a platform for integrating prior knowledge, omics data, and network inference methods, facilitating their usage and evaluation. NetworkCommons aims to be an infrastructure for the network...
2.
Farr E, Dimitrov D, Schmidt C, Turei D, Lobentanzer S, Dugourd A, et al.
Brief Bioinform
. 2024 Jul;
25(4).
PMID: 39038934
From the catalytic breakdown of nutrients to signaling, interactions between metabolites and proteins play an essential role in cellular function. An important case is cell-cell communication, where metabolites, secreted into...
3.
Muller-Dott S, Tsirvouli E, Vazquez M, Ramirez Flores R, Badia-I-Mompel P, Fallegger R, et al.
Nucleic Acids Res
. 2023 Oct;
51(20):10934-10949.
PMID: 37843125
Gene regulation plays a critical role in the cellular processes that underlie human health and disease. The regulatory relationship between transcription factors (TFs), key regulators of gene expression, and their...
4.
Csabai L, Bohar B, Turei D, Prabhu S, Foldvari-Nagy L, Madgwick M, et al.
Autophagy
. 2023 Aug;
20(1):188-201.
PMID: 37589496
Macroautophagy/autophagy is a highly-conserved catabolic procss eliminating dysfunctional cellular components and invading pathogens. Autophagy malfunction contributes to disorders such as cancer, neurodegenerative and inflammatory diseases. Understanding autophagy regulation in health...
5.
Lobentanzer S, Aloy P, Baumbach J, Bohar B, Carey V, Charoentong P, et al.
Nat Biotechnol
. 2023 Jun;
41(8):1056-1059.
PMID: 37337100
No abstract available.
6.
Utharala R, Grab A, Vafaizadeh V, Peschke N, Ballinger M, Turei D, et al.
Nat Protoc
. 2022 Oct;
17(12):2920-2965.
PMID: 36261631
Droplet microfluidics is a powerful tool for a variety of biological applications including single-cell genetics, antibody discovery and directed evolution. All these applications make use of genetic libraries, illustrating the...
7.
Dimitrov D, Turei D, Garrido-Rodriguez M, Burmedi P, Nagai J, Boys C, et al.
Nat Commun
. 2022 Jun;
13(1):3224.
PMID: 35680885
The growing availability of single-cell data, especially transcriptomics, has sparked an increased interest in the inference of cell-cell communication. Many computational tools were developed for this purpose. Each of them...
8.
Poletti M, Treveil A, Csabai L, Gul L, Modos D, Madgwick M, et al.
NPJ Syst Biol Appl
. 2022 May;
8(1):15.
PMID: 35501398
Increasing evidence points towards the key role of the epithelium in the systemic and over-activated immune response to viral infection, including SARS-CoV-2 infection. Yet, how viral infection alters epithelial-immune cell...
9.
Ostaszewski M, Niarakis A, Mazein A, Kuperstein I, Phair R, Orta-Resendiz A, et al.
Mol Syst Biol
. 2021 Dec;
17(12):e10851.
PMID: 34939300
No abstract available.
10.
Ostaszewski M, Niarakis A, Mazein A, Kuperstein I, Phair R, Orta-Resendiz A, et al.
Mol Syst Biol
. 2021 Oct;
17(10):e10387.
PMID: 34664389
We need to effectively combine the knowledge from surging literature with complex datasets to propose mechanistic models of SARS-CoV-2 infection, improving data interpretation and predicting key targets of intervention. Here,...