Davis J McCarthy
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Explore the profile of Davis J McCarthy including associated specialties, affiliations and a list of published articles.
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41
Citations
28653
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Recent Articles
1.
Vannan A, Lyu R, Williams A, Negretti N, Mee E, Hirsh J, et al.
Nat Genet
. 2025 Feb;
57(3):647-658.
PMID: 39901013
Large-scale changes in the structure and cellular makeup of the distal lung are a hallmark of pulmonary fibrosis (PF), but the spatial contexts that contribute to disease pathogenesis have remained...
2.
Kwok A, Shim H, McCarthy D
bioRxiv
. 2024 Dec;
PMID: 39713401
Single-cell Assay for Transposase Accessible Chromatin with sequencing (scATAC-seq) has become a widely used method for investigating chromatin accessibility at single-cell resolution. However, the resulting data is highly sparse with...
3.
Ibeh N, Kusuma P, Crenna Darusallam C, Malik S, Sudoyo H, McCarthy D, et al.
Am J Hum Genet
. 2024 Oct;
111(11):2458-2477.
PMID: 39383868
One of the regulatory mechanisms influencing the functional capacity of genes is alternative splicing (AS). Previous studies exploring the splicing landscape of human tissues have shown that AS has contributed...
4.
Frazer H, Pena-Solorzano C, Kwok C, Elliott M, Chen Y, Wang C, et al.
Nat Commun
. 2024 Aug;
15(1):7525.
PMID: 39214982
Artificial intelligence (AI) readers of mammograms compare favourably to individual radiologists in detecting breast cancer. However, AI readers cannot perform at the level of multi-reader systems used by screening programs...
5.
Chen Y, Liu Y, Wang C, Elliott M, Kwok C, Pena-Solorzano C, et al.
Med Image Anal
. 2024 May;
96:103192.
PMID: 38810516
Methods to detect malignant lesions from screening mammograms are usually trained with fully annotated datasets, where images are labelled with the localisation and classification of cancerous lesions. However, real-world screening...
6.
Ibeh N, Feigin C, Frankenberg S, McCarthy D, Pask A, Gallego Romero I
GigaByte
. 2024 May;
2024:gigabyte118.
PMID: 38746537
Marsupials exhibit distinctive modes of reproduction and early development that set them apart from their eutherian counterparts and render them invaluable for comparative studies. However, marsupial genomic resources still lag...
7.
Natri H, Del Azodi C, Peter L, Taylor C, Chugh S, Kendle R, et al.
Nat Genet
. 2024 Apr;
56(5):1034.
PMID: 38664563
No abstract available.
8.
Neavin D, Senabouth A, Arora H, Lee J, Ripoll-Cladellas A, Franke L, et al.
Genome Biol
. 2024 Apr;
25(1):94.
PMID: 38622708
Recent innovations in single-cell RNA-sequencing (scRNA-seq) provide the technology to investigate biological questions at cellular resolution. Pooling cells from multiple individuals has become a common strategy, and droplets can subsequently...
9.
Natri H, Del Azodi C, Peter L, Taylor C, Chugh S, Kendle R, et al.
Nat Genet
. 2024 Mar;
56(4):595-604.
PMID: 38548990
Common genetic variants confer substantial risk for chronic lung diseases, including pulmonary fibrosis. Defining the genetic control of gene expression in a cell-type-specific and context-dependent manner is critical for understanding...
10.
Pullin J, McCarthy D
Genome Biol
. 2024 Feb;
25(1):56.
PMID: 38409056
Background: The development of single-cell RNA sequencing (scRNA-seq) has enabled scientists to catalog and probe the transcriptional heterogeneity of individual cells in unprecedented detail. A common step in the analysis...