Daniel Weaver
Overview
Explore the profile of Daniel Weaver including associated specialties, affiliations and a list of published articles.
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29
Citations
982
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Recent Articles
11.
Birkel G, Ghosh A, Kumar V, Weaver D, Ando D, Backman T, et al.
BMC Bioinformatics
. 2017 Apr;
18(1):219.
PMID: 28420344
No abstract available.
12.
Birkel G, Ghosh A, Kumar V, Weaver D, Ando D, Backman T, et al.
BMC Bioinformatics
. 2017 Apr;
18(1):205.
PMID: 28381205
Background: Modeling of microbial metabolism is a topic of growing importance in biotechnology. Mathematical modeling helps provide a mechanistic understanding for the studied process, separating the main drivers from the...
13.
Paley S, OMaille P, Weaver D, Karp P
BMC Bioinformatics
. 2016 Dec;
17(1):529.
PMID: 27964719
Background: Metabolic pathway diagrams are a classical way of visualizing a linked cascade of biochemical reactions. However, to understand some biochemical situations, viewing a single pathway is insufficient, whereas viewing...
14.
Keseler I, Mackie A, Santos-Zavaleta A, Billington R, Bonavides-Martinez C, Caspi R, et al.
Nucleic Acids Res
. 2016 Dec;
45(D1):D543-D550.
PMID: 27899573
EcoCyc (EcoCyc.org) is a freely accessible, comprehensive database that collects and summarizes experimental data for Escherichia coli K-12, the best-studied bacterial model organism. New experimental discoveries about gene products, their...
15.
Tarver M, Huang Q, de Guzman L, Rinderer T, Holloway B, Reese J, et al.
Genom Data
. 2016 Jul;
9:97-9.
PMID: 27453819
The small hive beetle (SHB), Aethina tumida, is a major pest of managed honey bee (Apis mellifera) colonies in the United States and Australia, and an emergent threat in Europe....
16.
Karp P, Latendresse M, Paley S, Krummenacker M, Ong Q, Billington R, et al.
Brief Bioinform
. 2015 Oct;
17(5):877-90.
PMID: 26454094
Pathway Tools is a bioinformatics software environment with a broad set of capabilities. The software provides genome-informatics tools such as a genome browser, sequence alignments, a genome-variant analyzer and comparative-genomics...
17.
Karp P, Weaver D, Paley S, Fulcher C, Kubo A, Kothari A, et al.
EcoSal Plus
. 2015 Oct;
6(1).
PMID: 26442933
EcoCyc is a bioinformatics database available at EcoCyc.org that describes the genome and the biochemical machinery of Escherichia coli K-12 MG1655. The long-term goal of the project is to describe...
18.
Garcia Martin H, Kumar V, Weaver D, Ghosh A, Chubukov V, Mukhopadhyay A, et al.
PLoS Comput Biol
. 2015 Sep;
11(9):e1004363.
PMID: 26379153
Current limitations in quantitatively predicting biological behavior hinder our efforts to engineer biological systems to produce biofuels and other desired chemicals. Here, we present a new method for calculating metabolic...
19.
Cantarel B, Lei Y, Weaver D, Zhu H, Farrell A, Benstead-Hume G, et al.
BMC Genomics
. 2015 Aug;
16:602.
PMID: 26268606
Background: Deidentified newborn screening bloodspot samples (NBS) represent a valuable potential resource for genomic research if impediments to whole exome sequencing of NBS deoxyribonucleic acid (DNA), including the small amount...
20.
Karp P, Billington R, Holland T, Kothari A, Krummenacker M, Weaver D, et al.
Metabolites
. 2015 May;
5(2):291-310.
PMID: 26011592
BioCyc.org is a genome and metabolic pathway web portal covering 5500 organisms, including Homo sapiens, Arabidopsis thaliana, Saccharomyces cerevisiae and Escherichia coli. These organism-specific databases have undergone variable degrees of...