Chris Mungall
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Explore the profile of Chris Mungall including associated specialties, affiliations and a list of published articles.
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Recent Articles
11.
Cooper L, Meier A, Laporte M, Elser J, Mungall C, Sinn B, et al.
Nucleic Acids Res
. 2017 Nov;
46(D1):D1168-D1180.
PMID: 29186578
The Planteome project (http://www.planteome.org) provides a suite of reference and species-specific ontologies for plants and annotations to genes and phenotypes. Ontologies serve as common standards for semantic integration of a...
12.
Lizio M, Harshbarger J, Abugessaisa I, Noguchi S, Kondo A, Severin J, et al.
Nucleic Acids Res
. 2016 Oct;
45(D1):D737-D743.
PMID: 27794045
Upon the first publication of the fifth iteration of the Functional Annotation of Mammalian Genomes collaborative project, FANTOM5, we gathered a series of primary data and database systems into the...
13.
Ong E, Xiang Z, Zhao B, Liu Y, Lin Y, Zheng J, et al.
Nucleic Acids Res
. 2016 Oct;
45(D1):D347-D352.
PMID: 27733503
Linked Data (LD) aims to achieve interconnected data by representing entities using Unified Resource Identifiers (URIs), and sharing information using Resource Description Frameworks (RDFs) and HTTP. Ontologies, which logically represent...
14.
Buske O, Schiettecatte F, Hutton B, Dumitriu S, Misyura A, Huang L, et al.
Hum Mutat
. 2015 Aug;
36(10):922-7.
PMID: 26255989
Despite the increasing prevalence of clinical sequencing, the difficulty of identifying additional affected families is a key obstacle to solving many rare diseases. There may only be a handful of...
15.
Oellrich A, Koehler S, Washington N, Mungall C, Lewis S, Haendel M, et al.
J Biomed Semantics
. 2014 Aug;
5:S4.
PMID: 25093073
Background: The molecular etiology is still to be identified for about half of the currently described Mendelian diseases in humans, thereby hindering efforts to find treatments or preventive measures. Advances,...
16.
Aranguren M, Fernandez-Breis J, Mungall C, Antezana E, Rodriguez Gonzalez A, Wilkinson M
J Biomed Semantics
. 2013 Jan;
4(1):2.
PMID: 23286517
Background: Biomedical ontologies are key elements for building up the Life Sciences Semantic Web. Reusing and building biomedical ontologies requires flexible and versatile tools to manipulate them efficiently, in particular...
17.
Tirmizi S, Aitken S, Moreira D, Mungall C, Sequeda J, Shah N, et al.
J Biomed Semantics
. 2011 Mar;
2 Suppl 1:S3.
PMID: 21388572
Background: Ontologies are commonly used in biomedicine to organize concepts to describe domains such as anatomies, environments, experiment, taxonomies etc. NCBO BioPortal currently hosts about 180 different biomedical ontologies. These...
18.
Antezana E, Venkatesan A, Mungall C, Mironov V, Kuiper M
BMC Bioinformatics
. 2011 Jan;
11 Suppl 12:S8.
PMID: 21210987
Background: The biosciences increasingly face the challenge of integrating a wide variety of available data, information and knowledge in order to gain an understanding of biological systems. Data integration is...
19.
Alterovitz G, Xiang M, Hill D, Lomax J, Liu J, Cherkassky M, et al.
Nat Biotechnol
. 2010 Feb;
28(2):128-30.
PMID: 20139945
No abstract available.
20.
Gkoutos G, Mungall C, Dolken S, Ashburner M, Lewis S, Hancock J, et al.
Annu Int Conf IEEE Eng Med Biol Soc
. 2009 Dec;
2009:7069-72.
PMID: 19964203
This paper describes an approach to providing computer-interpretable logical definitions for the terms of the Human Phenotype Ontology (HPO) using PATO, the ontology of phenotypic qualities, to link terms of...