Beam E, Potts C, Poldrack R, Etkin A
Nat Neurosci. 2021; 24(12):1733-1744.
PMID: 34764476
PMC: 8761068.
DOI: 10.1038/s41593-021-00948-9.
Asikis T, Klinglmayr J, Helbing D, Pournaras E
R Soc Open Sci. 2021; 8(1):201418.
PMID: 33614080
PMC: 7890503.
DOI: 10.1098/rsos.201418.
Takan S, Allmer J
PeerJ. 2020; 8:e10216.
PMID: 33150092
PMC: 7585381.
DOI: 10.7717/peerj.10216.
Armean I, Lilley K, Trotter M, Pilkington N, Holden S
Bioinformatics. 2018; 34(11):1884-1892.
PMID: 29390084
PMC: 5972588.
DOI: 10.1093/bioinformatics/btx803.
Burek P, Loebe F, Herre H
J Biomed Semantics. 2017; 8(1):48.
PMID: 28978337
PMC: 5628467.
DOI: 10.1186/s13326-017-0152-y.
Coordinated Action of Biological Processes during Embryogenesis Can Cause Genome-Wide Linkage Disequilibrium in the Human Genome and Influence Age-Related Phenotypes.
Culminskaya I, Kulminski A, Yashin A
Ann Gerontol Geriatr Res. 2017; 3(1).
PMID: 28357417
PMC: 5367637.
Evaluating Health Information Systems Using Ontologies.
Eivazzadeh S, Anderberg P, Larsson T, Fricker S, Berglund J
JMIR Med Inform. 2016; 4(2):e20.
PMID: 27311735
PMC: 4929349.
DOI: 10.2196/medinform.5185.
Design and Development of a Sharable Clinical Decision Support System Based on a Semantic Web Service Framework.
Zhang Y, Gou L, Tian Y, Li T, Zhang M, Li J
J Med Syst. 2016; 40(5):118.
PMID: 27002818
DOI: 10.1007/s10916-016-0472-y.
An Independent Filter for Gene Set Testing Based on Spectral Enrichment.
Frost H, Li Z, Asselbergs F, Moore J
IEEE/ACM Trans Comput Biol Bioinform. 2015; 12(5):1076-86.
PMID: 26451820
PMC: 4666312.
DOI: 10.1109/TCBB.2015.2415815.
Evaluating the Emotion Ontology through use in the self-reporting of emotional responses at an academic conference.
Hastings J, Brass A, Caine C, Jay C, Stevens R
J Biomed Semantics. 2015; 5:38.
PMID: 25937879
PMC: 4417517.
DOI: 10.1186/2041-1480-5-38.
Spectral gene set enrichment (SGSE).
Frost H, Li Z, Moore J
BMC Bioinformatics. 2015; 16:70.
PMID: 25879888
PMC: 4365810.
DOI: 10.1186/s12859-015-0490-7.
Inferring gene ontologies from pairwise similarity data.
Kramer M, Dutkowski J, Yu M, Bafna V, Ideker T
Bioinformatics. 2014; 30(12):i34-42.
PMID: 24932003
PMC: 4058954.
DOI: 10.1093/bioinformatics/btu282.
Siri of the cell: what biology could learn from the iPhone.
Carvunis A, Ideker T
Cell. 2014; 157(3):534-8.
PMID: 24766803
PMC: 4154484.
DOI: 10.1016/j.cell.2014.03.009.
Optimization of gene set annotations via entropy minimization over variable clusters (EMVC).
Frost H, Moore J
Bioinformatics. 2014; 30(12):1698-706.
PMID: 24574114
PMC: 4058919.
DOI: 10.1093/bioinformatics/btu110.
Modeling the autism spectrum disorder phenotype.
McCray A, Trevvett P, Frost H
Neuroinformatics. 2013; 12(2):291-305.
PMID: 24163114
PMC: 4000751.
DOI: 10.1007/s12021-013-9211-4.
Measuring the evolution of ontology complexity: the gene ontology case study.
Dameron O, Bettembourg C, le Meur N
PLoS One. 2013; 8(10):e75993.
PMID: 24146805
PMC: 3795689.
DOI: 10.1371/journal.pone.0075993.
Annotation extension through protein family annotation coherence metrics.
Bastos H, Clarke L, Couto F
Front Genet. 2013; 4:201.
PMID: 24130572
PMC: 3795322.
DOI: 10.3389/fgene.2013.00201.
A DNA-based semantic fusion model for remote sensing data.
Sun H, Weng J, Yu G, Massawe R
PLoS One. 2013; 8(10):e77090.
PMID: 24116207
PMC: 3792926.
DOI: 10.1371/journal.pone.0077090.
Information-theoretic evaluation of predicted ontological annotations.
Clark W, Radivojac P
Bioinformatics. 2013; 29(13):i53-61.
PMID: 23813009
PMC: 3694662.
DOI: 10.1093/bioinformatics/btt228.
Automating the construction of gene ontologies.
Dolinski K, Botstein D
Nat Biotechnol. 2013; 31(1):34-5.
PMID: 23302932
DOI: 10.1038/nbt.2476.